Table 1 The identified important lncRNAs and their targeted coding genes involved in wheat spike development
From: Genome-wide profiling of long noncoding RNAs involved in wheat spike development
LncRNA ID | k-means cluster | Target gene ID | Description |
|---|---|---|---|
MSTRG.18189 | 8 | TraesCS2D02G534200, TraesCS2D02G533500, TraesCS2D02G533600, TraesCS2D02G533700, TraesCS2D02G533800, TraesCS2D02G533900, TraesCS2D02G534100, TraesCS2D02G534500, TraesCS2B02G561000, TraesCS2A02G532000, TraesCS2A02G531800, TraesCS2D02G533100, TraesCS2B02G513900, TraesCS2A02G532200, TraesCS2B02G560900, TraesCS2D02G487100, TraesCS2B02G513800 | Wound-responsive family protein |
MSTRG.18191 | 1 | TraesCS2D02G534200, TraesCS2D02G533700, TraesCS2D02G533800, TraesCS2D02G534100, TraesCS2D02G534500, TraesCS2D02G533400, TraesCS2D02G533500, TraesCS2A02G531800, TraesCS6B02G162700, TraesCS2D02G533100, TraesCS2A02G532100, TraesCS2B02G513900, TraesCS2A02G532200, TraesCS2D02G532000, TraesCS2D02G487100, TraesCS2B02G561200 | Wound-responsive family protein |
MSTRG.11500 | 1 | TraesCS2B02G561000, TraesCS2A02G531800, TraesCS2A02G532100, TraesCS2B02G513900, TraesCS2D02G533800, TraesCS2B02G560900, TraesCS2B02G561300, TraesCS2B02G561400 | Wound-responsive family protein |
MSTRG.11521 | 7 | TraesCS2B02G561000, TraesCS2D02G534200, TraesCS2A02G532000, TraesCS2D02G533500, TraesCS2A02G531800, TraesCS2D02G533100, TraesCS2A02G532200, TraesCS2D02G487100 | Wound-responsive family protein |
MSTRG.14912 | 7 | TraesCS2B02G561300, TraesCS2B02G561400, TraesCS2B02G561500, TraesCS2A02G531800, TraesCS2D02G533800 | Wound-responsive family protein |
MSTRG.14917 | 8 | TraesCS2B02G561900, TraesCS2B02G562000, TraesCS2B02G561600, TraesCS2A02G532300, TraesCS2D02G534100 | Wound-responsive family protein |
MSTRG.59826 | 7 | TraesCS7D02G087600, TraesCS7D02G087700, TraesCS7D02G088000, TraesCS7D02G088100, TraesCS7D02G087500, TraesCS7D02G087800 | Early nodulin 93 |
MSTRG.53898 | 7 | TraesCS7A02G092000, TraesCS7A02G093100, TraesCS7D02G088600 | Early nodulin 93 |
MSTRG.47943 | 7 | TraesCS6A02G350100, TraesCS6B02G383200, TraesCS6A02G350300, TraesCS6D02G332500, TraesCS6D02G332700 | Dehydrin |
MSTRG.28564 | 9 | TraesCS4A02G078700 (MADS4) | MADS box transcription factor |
MSTRG.61765 | 9 | TraesCS7D02G380300 (MADS16) | MADS box transcription factor |
MSTRG.51463 | 3 | TraesCS6B02G124700, TraesCS6A02G096300, TraesCS6D02G087400 | BZIP transcription factor |
MSTRG.62263 | 7 | TraesCS7A02G488600, TraesCS7B02G391800, TraesCS7D02G475100 | BZIP transcription factor |
MSTRG.39593 | 8 | TraesCS5B02G059200 | BZIP transcription factor |
MSTRG.43002 | 8 | TraesCS5D02G068800 | BZIP transcription factor |
MSTRG.57306 | 9 | TraesCS7B02G131600 | Transcription factor RADIALIS |
MSTRG.30797 | 8 | TraesCS4A02G474100 | MYB-related transcription factor |
MSTRG.29168 | 1 | TraesCS4A02G158100 | Auxin-repressed protein |
MSTRG.32137 | 8 | TraesCS4B02G161800 | Auxin response factor |
MSTRG.51533 | 9 | TraesCS6D02G100900 | Auxin response factor |
MSTRG.17999 | 5 | TraesCS2D02G491200 (ARF5) | Auxin response factor |
MSTRG.59353 | 9 | TraesCS7A02G557400, TraesCS7B02G482100 (AGO1d) | Protein Argonaute |
MSTRG.23144 | 9 | TraesCS3B02G260400 | SWI/SNF-related protein |
MSTRG.19854 | 9 | TraesCS3A02G231100 | SWI/SNF-related protein |