Fig. 1
From: Multi-omics approach highlights differences between RLP classes in Arabidopsis thaliana
Phylogenetic tree of the conserved C3-F domain of RLPs. The tree was generated using RaxML with 1000 bootstraps. The basal RLPs (bRLPs) which are not upregulated after pathogen treatment and the pathogen-responsive RLPs (prRLPs) which are upregulated after pathogen treatment cluster together within the phylogenetic tree.Highlighted in blue are the putative developmental orthologs (PDOs) and in yellow the validated defence RLPs (VDRs). Boxed in yellow are the pathogen-responsive RLPs (prRLPs) that are at least 2.5x upregulated with a p-value of 0.001 after infection with various pathogens (except AtRLP6, 47 and 48 which are only 1.5x upregulated). Boxed in blue are the basal RLPs (bRLPs) which were not upregulated by pathogen infection (<|2.5|, p-value = 0.001). Used datasets are AT_AFFY_ATH1-0 and AT_mRNAseq_ARABI_GL-3. *AtRLP1, AtRLP3 and AtRLP21 showed an upregulation after pathogen treatment. °AtRLP25 is not up or down regulated at all and AtRLP8 was not present in the used datasets