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Table 2 Annotation results statistics of SNPs and indels containing candidate region

From: Selection of functional EPHB2 genotypes from ENU mutated grass carp treated with GCRV

Different region and types of Mutation SNP annotation result statistics InDel annotation result statistics SNP annotation results Statistics in candidate regions InDel annotation results statistics in the candidate regions
  S01vsR02 S01vsR02 S01vsR02 S01vsR02
INTERGENIC 220,527 89,734 4223 1797
INTRON 144,560 27 2538 1242
UPSTREAM 37,653 66,109 618 266
DOWNSTREAM 37,132 16,283 653 232
UTR_5_PRIME 3202 16,315 43 25
UTR_3_PRIME 4074 1945 60 26
SPLICE_SITE_ACCEPTOR 118 2169 1 1
SPLICE_SITE_DONOR 100 94 2 2
SPLICE_SITE_REGION 912 66 20 5
FRAME_SHIFT 50
CODON_INSERTION 7
CODON_DELETION 6
CODON_CHANGE_PLUS_CODON_INSERTION 3
CODON_CHANGE_PLUS_CODON_DELETION 3
START_GAINED 648 401 7
START_LOST 5 15
SYNONYMOUS_START 3 3272 1
NON_SYNONYMOUS_START 1 276
SYNONYMOUS_CODING 7251 271 139
NON_SYNONYMOUS_CODING 9298 150 180
SYNONYMOUS_STOP 71 277
STOP_GAINED 449 178 6 2
STOP_LOST 158 62 1 1
Other 0 0 0 0
Total 466,162 197,644 8492 3668