Table 3 SNP and InDel filtering statistics
From: Selection of functional EPHB2 genotypes from ENU mutated grass carp treated with GCRV
Filtering statistics | Total SNP | Total InDel | Multiple allele loci | Read support for sites less than 4 | Loci with consistent pool | High quality number after filteration |
|---|---|---|---|---|---|---|
SNP | 2,563,128 | – | 2212 | 40,627 | 207,275 | 2,313,014 |
InDel | – | 908,500 | 36,042 | 37,050 | 59,427 | 775,981 |