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Table 6 Number of upregulated, downregulated and unchanged mRNA, miRNAs, proteins and phosphosites per tumor nodule

From: Multi-omics data integration reveals novel drug targets in hepatocellular carcinoma

 

RNA

PROTEOME

PHOSPHOPROTEOME

miRNA

MOUSE|NODULE

DOWN

NOT

UP

DOWN

NOT

UP

DOWN

NOT

UP

DOWN

NOT

UP

Mouse1-N1

1621

18953

2158

867

2029

1651

413

850

899

37

1243

51

Mouse1-N2

2269

18208

2651

979

2111

1328

407

1803

1701

60

1212

59

Mouse1-N3

1785

18786

2394

681

2117

1155

314

808

619

55

1234

42

Mouse2-N1

1909

18674

2473

1249

2568

1407

283

335

428

46

1234

51

Mouse2-N2

1692

19053

2310

774

1786

1653

887

1125

815

54

1235

42

Mouse2-N3

1950

18843

2559

860

2269

1310

251

1131

1299

49

1225

57

Mouse3-N1

2005

18645

2404

627

2959

715

294

1021

1255

49

1240

42

Mouse3-N2

2211

18392

2609

1228

2151

1933

286

411

514

59

1218

54

Mouse3-N3

1862

18803

2326

986

2028

1849

158

505

1019

51

1228

52

Mouse4-N1

1919

18640

2532

950

2128

1256

323

1759

1239

53

1210

68

Mouse4-N2

1538

19196

2275

840

2019

1588

300

1811

1461

62

1197

72

Mouse4-N3

2034

18319

2689

1070

2096

1715

454

1345

1185

70

1196

65

  1. For each nodule of each mouse the number of upregulated, downregulated and unchanged mRNAs, miRNAs, proteins and phosphosites are given.