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Table 4 Candidate genes for anther color and hull color of foxtail millet

From: Identification of QTL related to anther color and hull color by RAD sequencing in a RIL population of Setaria italica

QTL

Gene name

Position (bp)

Reference allele

Variant allele

Variant effect

Description

IRA1AC

Seita.6G228600.v2.2

34,176,600

C

T

nonsynonymous

S-acyltransferase 7

Seita.6G228700.v2.2

34,188,715

T

C

nonsynonymous

uncharacterized protein

34,188,806

G

C

nonsynonymous

34,188,814

A

C

nonsynonymous

34,188,829

C

CCGCGGAGGG

Non frameshift insertion

34,188,867

G

C

nonsynonymous

34,188,911

C

A

nonsynonymous

34,188,941

T

G

nonsynonymous

IRA2HC

Seita.1G057100.v2.2

5,482,347

G

A

nonsynonymous

UDP-glucose glucosyltransferase

Seita.1G057300.v2.2

5,496,605

A

G

nonsynonymous

cinnamyl alcohol dehydrogenase

IRA3HC

Seita.1G060200.v2.2

5,699,160

A

G

nonsynonymous

sucrose-phosphate synthase 2