Table 1 Comparison of HGSVC (H.) and InvertypeR (I.) inversion genotype calls obtained with the same Strand-seq data (9 individuals × 227 simple inversions = 2043 genotypes). The HGSVC also used multiple additional data types (e.g., PacBio)
From: InvertypeR: Bayesian inversion genotyping with Strand-seq data
Inversion genotypes | ||||
|---|---|---|---|---|
2043 | ||||
H. and I. confident genotypes | H. or I. ambiguous genotypes | |||
1512 | 531 | |||
H. and I. agree | H. and I. disagree | I. ambiguous | H. ambiguous | Both ambiguous |
1321 | 191 | 516 | 14 | 1 |