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Table 1 Detailed information of 13 SNPs identified in HTR1B gene

From: Determination of genetic effects and functional SNPs of bovine HTR1B gene on milk fatty acid traits

SNP name Location Position (UMD 3.1.1) EVA no. Genotype NO. Frequency Allele Frequency
g.17307103A > T 5′ flanking region Chr9: 17307103 rs207969357 AA 481 0.4621 A 0.6830
TT 100 0.0961 T 0.3170
TA 460 0.4419   
g.17305206 T > G 5′ UTR Chr9: 17305206 rs476055046 TT 651 0.6242 T 0.8121
GG 0 0.0000 G 0.1879
GT 392 0.3758   
g.17303761C > T 5′ UTR Chr9: 17303761 rs133683693 CC 113 0.1088 C 0.3503
TT 424 0.4081 T 0.6497
CT 502 0.4832   
g.17303383G > T Exon-1 Chr9: 17303383 rs209984404 GG 504 0.4846 G 0.6986
TT 91 0.0875 T 0.3014
GT 445 0.4279   
g.17303042C > G Exon-1 Chr9: 17303042 rs208945882 CC 499 0.4897 C 0.6977
GG 96 0.0942 G 0.3023
CG 424 0.4161   
g.17302291C > G 3′ UTR Chr9: 17302291 rs136136524 CC 279 0.2680 C 0.5259
GG 225 0.2161 G 0.4741
CG 537 0.5159   
g.17302078G > T 3′ UTR Chr9: 17302078 rs135063494 GG 502 0.4818 G 0.6972
TT 91 0.0873 T 0.3028
GT 449 0.4309   
g.17301689 T > C 3′ UTR Chr9: 17301689 rs379078023 CC 103 0.1012 C 0.3089
TT 492 0.4833 T 0.6911
CT 423 0.4155   
g.17301647G > T 3′ UTR Chr9: 17301647 rs109548495 GG 115 0.1103 G 0.3514
TT 425 0.4075 T 0.6486
GT 503 0.4823   
g.17299803A > G 3′ UTR Chr9: 17299803 rs208790360 AA 499 0.4854 A 0.6989
GG 90 0.0875 G 0.3011
AG 439 0.4270   
g.17298882A > G 3′ flanking region Chr9: 17298882 rs380460000 AA 2 0.0038 A 0.5019
GG 0 0.0000 G 0.4981
AG 523 0.9962   
g.17296725C > T 3′ flanking region Chr9: 17296725 rs208087947 CC 503 0.4846 C 0.6985
TT 91 0.0877 T 0.3015
CT 444 0.4277   
g.17296695 T > C 3′ flanking region Chr9: 17296695 rs133617481 CC 90 0.0872 C 0.2994
TT 504 0.4884 T 0.7006
CT 438 0.4244   
  1. Note: EVA European Variation Archive, UTR untranslated region