Determination of genetic effects and functional SNPs of bovine HTR1B gene on milk fatty acid traits

BMC Genomics

Table 1 Detailed information of 13 SNPs identified in HTR1B gene

SNP name	Location	Position (UMD 3.1.1)	EVA no.	Genotype	NO.	Frequency	Allele	Frequency
g.17307103A > T	5′ flanking region	Chr9: 17307103	rs207969357	AA	481	0.4621	A	0.6830
				TT	100	0.0961	T	0.3170
				TA	460	0.4419
g.17305206 T > G	5′ UTR	Chr9: 17305206	rs476055046	TT	651	0.6242	T	0.8121
				GG	0	0.0000	G	0.1879
				GT	392	0.3758
g.17303761C > T	5′ UTR	Chr9: 17303761	rs133683693	CC	113	0.1088	C	0.3503
				TT	424	0.4081	T	0.6497
				CT	502	0.4832
g.17303383G > T	Exon-1	Chr9: 17303383	rs209984404	GG	504	0.4846	G	0.6986
				TT	91	0.0875	T	0.3014
				GT	445	0.4279
g.17303042C > G	Exon-1	Chr9: 17303042	rs208945882	CC	499	0.4897	C	0.6977
				GG	96	0.0942	G	0.3023
				CG	424	0.4161
g.17302291C > G	3′ UTR	Chr9: 17302291	rs136136524	CC	279	0.2680	C	0.5259
				GG	225	0.2161	G	0.4741
				CG	537	0.5159
g.17302078G > T	3′ UTR	Chr9: 17302078	rs135063494	GG	502	0.4818	G	0.6972
				TT	91	0.0873	T	0.3028
				GT	449	0.4309
g.17301689 T > C	3′ UTR	Chr9: 17301689	rs379078023	CC	103	0.1012	C	0.3089
				TT	492	0.4833	T	0.6911
				CT	423	0.4155
g.17301647G > T	3′ UTR	Chr9: 17301647	rs109548495	GG	115	0.1103	G	0.3514
				TT	425	0.4075	T	0.6486
				GT	503	0.4823
g.17299803A > G	3′ UTR	Chr9: 17299803	rs208790360	AA	499	0.4854	A	0.6989
				GG	90	0.0875	G	0.3011
				AG	439	0.4270
g.17298882A > G	3′ flanking region	Chr9: 17298882	rs380460000	AA	2	0.0038	A	0.5019
				GG	0	0.0000	G	0.4981
				AG	523	0.9962
g.17296725C > T	3′ flanking region	Chr9: 17296725	rs208087947	CC	503	0.4846	C	0.6985
				TT	91	0.0877	T	0.3015
				CT	444	0.4277
g.17296695 T > C	3′ flanking region	Chr9: 17296695	rs133617481	CC	90	0.0872	C	0.2994
				TT	504	0.4884	T	0.7006
				CT	438	0.4244

ISSN: 1471-2164