Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae

Nagel, Jan H.; Wingfield, Michael J.; Slippers, Bernard

doi:10.1186/s12864-021-07902-w

Table 4 Comparison between the secreted and non-secreted amounts of the twenty most abundant secreted enzyme families in the Botryosphaeriaceae

From: Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae

Enzyme family	CBM1	S09	AA3	abH03	abH36	GH3	GH43	GH5	A01	AA9	CBM18	S10	AA1	GH28	S08	CBM13	M28	PL1	CE5	PL3
Amount of secreted proteins
Botryosphaeriaceae average	42.85	28.96	22.62	20.50	13.62	12.92	12.54	11.38	11.38	10.92	10.73	10.50	9.81	8.73	8.23	7.69	7.38	7.35	7.23	5.96
Deviation from the Dothideomycetes average^a	13.77	12.19	8.85	11.04	5.08	5.15	5.97	3.08	5.77	0.33	4.01	2.09	3.86	4.09	2.10	3.05	0.90	3.12	2.85	3.45
Significantly greater than^b	D	D, P	D, P	D, P	D, P	D, P	D, P	D, P	D, P	D	D, P	D, P	D, P	D, P	D, P	D, P	D	D, P	D, P	D, P
Significantly less than^b										P
Amount of non-secreted proteins
Botryosphaeriaceae average	4.73	52.00	12.50	6.85	0.62	10.58	2.12	4.65	10.92	0.85	1.73	3.42	9.54	0.77	3.42	1.15	3.96	0.19	0.27	1.46
Deviation from the Dothideomycetes average^a	−0.60	6.49	0.47	−1.03	−1.38	3.47	−2.68	−1.17	1.87	−1.08	−2.91	0.63	4.26	−0.41	−0.91	0.08	−1.78	−0.17	−0.99	1.00
Significantly greater than^b		D, P	D	D		D, P			P			P	D, P							D, P
Significantly less than^b				P	D, P		P	D, P		P	P			D	P		D, P	P	D, P
Ratio of secreted to total predicted amounts
Dothideomycetidae	0.79	0.23	0.48	0.61	0.75	0.59	0.57	0.52	0.34	0.88	0.54	0.71	0.48	0.63	0.61	0.73	0.43	0.94	0.76	0.30
Pleosporomycetidae	0.81	0.29	0.53	0.53	0.79	0.46	0.53	0.59	0.42	0.85	0.61	0.76	0.54	0.88	0.56	0.83	0.55	0.91	0.76	0.94
Botryosphaeriaceae	0.90	0.36	0.63	0.76	0.95	0.56	0.85	0.71	0.51	0.93	0.87	0.76	0.51	0.93	0.72	0.88	0.65	0.97	0.95	0.81
Eutiarosporella	0.94	0.42	0.61	0.97	0.95	0.59	0.75	0.68	0.47	0.97	0.89	0.86	0.58	1.00	0.72	0.95	0.67	1.00	0.94	0.89
Diplodia	0.91	0.32	0.56	0.74	0.89	0.59	0.81	0.67	0.49	0.88	0.89	0.85	0.54	0.96	0.83	0.87	0.65	0.97	0.87	0.81
Lasiodiplodia	0.88	0.36	0.61	0.73	1.00	0.59	0.88	0.70	0.49	0.81	0.89	0.76	0.49	0.90	0.68	0.83	0.59	0.98	1.00	0.75
Botryosphaeria-clade	0.88	0.32	0.67	0.70	0.94	0.61	0.86	0.72	0.59	0.92	0.92	0.71	0.52	0.93	0.79	0.80	0.61	0.96	1.00	0.71
Neofusicoccum	0.90	0.37	0.68	0.75	0.97	0.49	0.88	0.74	0.52	0.99	0.82	0.70	0.48	0.89	0.66	0.90	0.68	0.98	0.98	0.84

^a Deviation from the Dothideomycetes average excluding the Botryosphaeriaceae
^b Dothideomycete subclass designation: D Dothideomycetidae, P Pleosporomycetidae

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ISSN: 1471-2164

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