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Table 3 cif genes in Wolbachia strains of Rhagoletis cerasi

From: Genome analyses of four Wolbachia strains and associated mitochondria of Rhagoletis cerasi expose cumulative modularity of cytoplasmic incompatibility factors and cytoplasmic hitchhiking across host populations

  Gene Size (aa) Locus Orthologue, size (aa), % similarity Type Evidence for CI
wCer1 INQ25_05555 491 cifA wHa_RS01435, 492, 91% I UNCERTAIN: No crossing experiment data exists; but strong linkage with mitochondrial haplotype (HT1) in Rhagoletis cerasi field populations
INQ25_05550 1143 cifB wHa_RS01430, 1148, 91% I
INQ25_01115 491 cifA wHa_RS01435, 492,88% I
INQ25_01120 1150 cifB wHa_RS01430, 1148, 92% I
wCer2 E3V96_03425 475 cifA wMel_RS02835, 475, 99% I YES: Experimental evidence for CI in multiple novel hosts - Drosophila simulans, Ceratitis capitata, Bactrocera oleae; strong linkage of wCer2 with mitochondrial haplotype (HT2) in R. cerasi field populations
E3V96_03430 1174 cifB wMel_RS06940, 1174, 99.7% I
E3V96_02935 481 cifA wVitA_RS00555, 499, 75% I
E3V96_02940 1531 cifB wVitA_RS00550, 1523, 85% I
E3V96_06520 492 cifA wPip_RS01410, 504, 90% I
E3V96_06515 921 cifB wPip_RS01415, 1175, 83% I
E3V96_03725 438 cifA wIrr_E0495_RS03300, 429, 66% V
E3V96_03720 3405 cifB wStriCN_BVG17_RS00730, 3083, 72% V
wCer4 INQ27_01280 494 cifA wHa_RS01435, 492, 79% I YES: Experimental evidence for strong CI in novel host C. capitata
INQ27_01275 1166 cifB wPip_RS01415, 1175, 85% I
INQ27_01270 415 cifA wStriCN_BVG17_RS06595, 415, 84% V
INQ27_01265 3332 cifB wStriCN_BVG17_RS06590, 4358, 72% V
wCer5 INQ21_01080 446 cifA wPip_RS01460, 446, 99.8% IV UNCERTAIN: No crossing experiment data exists; but very high similarity of cif gene sequences to the Type IV cifA/B genes of wPip with proven CI induction
INQ21_01085 733 cifB wPip_RS01465, 733, 99.6% IV