|
Trait measured during each phase a
|
Number of genes from expression residuals with or without adjustment for cell composition
|
Correlation of estimates
|
|---|
|
Without
|
With
|
With+Without b
|
|---|
|
Quarantine Nursery
|
|
qNurHS1
|
395 (1656) c
|
29 (1106)
|
395
|
0.92
|
|
qNurHS2
|
171 (982)
|
101 (0)
|
173
|
0.93
|
|
Growth rate
|
744 (3224)
|
830 (3357)
|
856
|
1.00
|
|
Challenge Nursery
|
|
Health score
|
0 (0)
|
0 (0)
|
0
|
0.94
|
|
Treatment rate
|
0 (0)
|
0 (0)
|
0
|
0.96
|
|
Mortality + treatments
|
347 (3138)
|
170 (2956)
|
349
|
0.99
|
|
Mortality
|
7 (2592)
|
2 (2649)
|
7
|
1.00
|
|
Growth rate
|
0 (0)
|
0 (0)
|
0
|
0.98
|
|
Challenge Finisher
|
|
Health score
|
0 (1048)
|
6 (1632)
|
6
|
1.00
|
|
Treatment rate
|
0 (176)
|
0 (48)
|
0
|
0.99
|
|
Mortality + treatments
|
0 (2014)
|
0 (1907)
|
0
|
0.99
|
|
Mortality
|
0 (2900)
|
0 (2787)
|
0
|
0.99
|
|
Growth rate
|
0 (0)
|
0 (0)
|
0
|
0.97
|
|
Feed intake
|
0 (270)
|
0 (0)
|
0
|
0.98
|
|
Feed intake duration
|
0 (0)
|
0 (0)
|
0
|
0.97
|
|
Feed conversion rate
|
422 (2768)
|
1 (1373)
|
422
|
0.95
|
|
Residual feed intake
|
0 (1892)
|
0 (1569)
|
0
|
0.97
|
|
Overall Challenge
|
|
Treatment rate
|
0 (0)
|
0 (0)
|
0
|
0.98
|
|
Mortality + treatments
|
40 (2663)
|
0 (2152)
|
40
|
0.99
|
|
Mortality
|
1725 (5152)
|
1458 (5298)
|
1794
|
0.99
|
|
Carcass
|
|
Carcass weight
|
0 (353)
|
0 (0)
|
0
|
0.96
|
|
Dressing proportion
|
0 (0)
|
0 (0)
|
0
|
0.96
|
|
Lean yield
|
42 (3912)
|
3 (2593)
|
42
|
0.97
|
|
Carcass backfat
|
18 (3555)
|
1 (2827)
|
18
|
0.97
|
|
Carcass loin depth.
|
0 (290)
|
0 (395)
|
0
|
0.99
|
- Abbreviations: qNurHS1 and qNurHS2, health scores in the quarantine nursery
- a Health score was recorded by 1 (pigs in perfect health) and 0 (pigs with clinical signs); Mortality with treatments was recorded by 0 (pigs that survived without any treatment) and 1 (pigs that died during a given period); Mortality was recorded by 0 (survival) and 1 (death)
- b The number of genes that were significant for at least one of the models with or without accounting for blood cell composition
- c The number of significant genes (q < 0.20) from expression residuals with or without adjustment for cell composition and, within parentheses, the estimated number of genes that did not follow the null-hypothesis using the method descibed in [21]
