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Table 3 Stable rapid visco analyzer (RVA) quantitative trait loci (QTLs) detected more than three times

From: QTL mapping for starch paste viscosity of rice (Oryza sativa L.) using chromosome segment substitution lines derived from two sequenced cultivars with the same Wx allele

Chromosome

Marker

Interval (Mb)

Traits

Other RVA QTL co-located

1

RM488

25.75–27

SB

qBDV1 [18]; qBDV1 [24]

1

RM3143

28.05–29

BD

qPKV1 [24]

2

RM5390

10.15–11.11

PaT, TV

qCPV2, qSBV2 [34]; qBDV2a, qCSV2a, qTD2 [23]

2

RM3795

16.9–20.95

FVa, TVa,SB, PaT

qPKV2, qCPV2, qSBV2 [34]; qPeT2 [15]

2

RM191

25.75–29.3

FV

qBDV2 [35] ; qHPV2 [34]; qPaT [27]

2

RM1342

28.65–29.3

PV, PaT

qHPV2 [35]; qPKV2 [18]

4

RM518

1.1–3.24

SB

qPKV4 [27]

4

RM6748–RM5473

30.45–32.65

SB

qPT4 [35]; qASV [36]

5

RM289

7.13–8.55

BD, PaT, SB, FV

qSBV5, qCSV5 [34]; qHPV5 [35]; qPV5, qHPV5, qPeT5 [15]

5

RM178

24.59–26.37

BD, FV, SB ,PaT

qPKV5, qHKV5 [22]

6

RM469–RM587

0.56–2.86

SB, PV, BD, PeT, PaT

qPeT6 [3]; qTPV6, qFPV6, qBDV6, qSBV6, qPKT6 [21]; qHPV6–1, qCPV6, qCS6, qSBV6 [7]; qPKV6, qBDV6, qSBV6, qPeT6 [24]; qBD6, qSB6 [1]; qTV6, qCPV6, qSBV6, qPeT6, qPKV6 [25]

6

RM527

9.31–10.98

SB, FV

qPeT6 [24]

6

RM3827

22.55–23.8

SB

 

6

RM3628

23.8–24.8

PV

qHPV6 [1]

6

RM412

30.85–31.59

SB

qBDV6, qCSV6, qCPV6, qHPV6, qSBV6 [18]

7

RM542

12.41–14.5

PeT

qGT7 [23]

7

RM432

18.6–20.55

PaTa, TVa

qCPV7 [18]; qHPV7, qBDV7, qCPV7 [24]; qGT7–1 [23]; qPaT-7, qPeT-7 [25]

8

RM5485

23.32–25.4

FV

qBDV8, qPeT8 [34]; qPKV8 [24]; qPKV8, qHPV8, qHPV6 [3]

9

RM219

7.39–9.11

BD, PV, SB, PaT, PeT, FVa

qPaT9 [15]; qPKV9,qBDV9-b [25]

9

RM566

14.63–16.15

PV, PeT

qPKV10 [34]; qHPV9, qHPV9 [1]; qCPV9, qCS9 [15]

10

10–1.63

0.8–2.12

BD, FV, SB, TV

qCPV10, qSBV10, qCSV10 [3]; qBDV10, qPeT10 [37]

10

10–9.12

8.76–9.57

TVa,FV, BD

qPKV10, qHPV10, qCPV10, qSBV10, qPeT10, qCSV10 [3]; qSB10 [27]

10

RM1375

15.89–18.04

BD

qCPV10; qSBV10; qPeT10, qHPV10, qPKV10 [3]; qPET10, qPAT10, qPKV10, qPKV10 [34]

11

RM1812

1.35–2.61

BD

qBDV11, qPKV11,qPaT11 [25]

12

RM1261

15.52–18.07

FV

qGT12 [23]; qPaT12 [15] ; qBDV12, qPaT12 [25]

12

RM1227

27.4–27.6

FV, SB

qGT12 [23]

  1. aThe QTL was detected in each of the four years of the study