Table 4 Co-location of known SSRGs with the starch rapid visco analyzer (RVA) quantitative trait loci (QTLs) detected in this study

ADPlar

LOC_Os05g50380

Chr.5, 28.87

BD, FV

27.95–28.85

99.82

10

0

ADPiso

LOC_Os01g44220

Chr.1, 25.35

BD, PT, PeT

23.85–25.75

99.78

4

0

ADPsma

LOC_Os09g12660

Chr.9, 7.24

BD, PV, SB, PaT, PeT, FV^a

7.39–9.11

99.75

9

5

GBSSI (Wx)

LOC_Os06g04200

Chr.6, 1.70

SB, PV, BD, PeT, PaT

0.56–2.86

100

0

0

SSI

LOC_Os06g06560

Chr.6, 3.08

–

–

99.94

7

0

SSII-1

LOC_Os10g30156

Chr.10, 15.67

BD98.06-100

15.89–18.04

99.64

8

4

SSII-2

LOC_Os02g51070

Chr.2, 31.23

PK, PK

30.45–34.75

99.66

3

4

SSII-3

LOC_Os06g12450

Chr.6, 6.75

–

–

100

0

0

SSIII-1

LOC_Os04g53310

Chr.4, 31.76

SB

30.45–32.65

99.81

24

4

SSIII-2

LOC_Os08g09230

Chr.8, 5.35

BD, FV, PK, TV

4.75–6.28

99.61

9

57

SSIV-1

LOC_Os01g52250

Chr.1, 30.04

PK, ST, TV

29.75–35.1

98.06

16

152

SSIV-2

LOC_Os05g45720

Chr.5, 26.48

BD, FV, SB ,PaT

24.59–26.37

99.7

10

0

SBE1

LOC_Os06g26234

Chr.6, 15.33

–

–

99.71

33

65

SBE3

LOC_Os02g32660

Chr.2, 19.36

FV^a, TV^a,SB, PaT

16.9–20.95

99.69

77

2

SBE4

LOC_Os04g33460

Chr.4, 20.12

–

–

99.87

15

21

ISA

LOC_Os08g40930

Chr.8, 25.89

FV

23.32–25.4

99.59

17

2

PUL

Os04G0164900

Chr.4, 4.40

BD, PeT, ST

3.24–5.38

74.69

402

78