Table 2 List of TFs-HRi from TCGA-STAD analysis. Here we have the Transcript Factors (TF) found as playing an important role in the given comparison. Also shown is the mean of expression (avgexpr) for each TF, in addition to the values of the metrics RIF1 and RIF2. Finally, freq.NT and frep.TP columns represent the frequency of appearance of the given TF in each condition, with freq.diff being the difference between these frequencies. A positive difference means that TF plays an important role in the reference condition in the NT case, whereas a negative difference means that TF plays an important role in the condition TP
TF | avgexpr | RIF1 | RIF2 | freq.NT | freq.TP | freq.diff |
|---|---|---|---|---|---|---|
SETD3 | 5.854 | 1.409 | 2.189 | 162 | 13 | 149 |
HOXB3 | 4.309 | 0.517 | 2.282 | 159 | 14 | 145 |
RNF115 | 4.96 | -2.324 | 1.64 | 153 | 19 | 134 |
TOX4 | 6.183 | 2.345 | 1.63 | 139 | 9 | 130 |
ASCL2 | 3.96 | 2.179 | 0.678 | 147 | 18 | 129 |
FOXA1 | 5.597 | -0.801 | 2.022 | 159 | 34 | 125 |
SOX4 | 7.281 | 3.554 | 1.072 | 149 | 29 | 120 |
CSDE1 | 8.816 | -0.069 | 2.153 | 172 | 53 | 119 |
TEAD3 | 5.903 | -0.225 | 2.031 | 157 | 46 | 111 |
VEZF1 | 6.211 | -0.385 | 2.243 | 157 | 47 | 110 |
TERF1 | 4.853 | -2.475 | 0.902 | 123 | 17 | 106 |
RBBP7 | 7.086 | 2.393 | 1.872 | 147 | 42 | 105 |
BBX | 6.22 | -0.314 | 2.09 | 154 | 55 | 99 |
ECD | 5.17 | 3.16 | 0.778 | 115 | 20 | 95 |
SPDEF | 3.749 | -2.081 | 1.078 | 114 | 20 | 94 |
TULP3 | 5.059 | 0.698 | 2.012 | 152 | 58 | 94 |
TRIM16 | 5.74 | -2.266 | 0.721 | 127 | 35 | 92 |
ZBTB7C | 3.999 | -3.093 | 0.824 | 122 | 30 | 92 |
NFX1 | 5.733 | 3.149 | 0.852 | 96 | 13 | 83 |
TP53 | 6.305 | -2.016 | -0.005 | 89 | 8 | 81 |
NFE2L3 | 6.01 | 2.484 | 1.068 | 175 | 112 | 63 |
TSC22D4 | 5.989 | -1.976 | -0.106 | 72 | 9 | 63 |
AFF4 | 7.147 | 2.486 | 0.539 | 89 | 27 | 62 |
ELF1 | 6.758 | -2.384 | -0.09 | 76 | 16 | 60 |
VTN | 1.905 | -2.277 | 0.02 | 66 | 13 | 53 |
ADNP2 | 5.251 | 2.319 | 0.311 | 79 | 29 | 50 |
KLF4 | 6.519 | -3.313 | -0.297 | 73 | 24 | 49 |
CDC5L | 5.794 | 2.845 | -0.058 | 69 | 36 | 33 |
KLF6 | 7.737 | -2.584 | -1.222 | 31 | 10 | 21 |
PER1 | 5.694 | 2.051 | 0.866 | 127 | 115 | 12 |
MYC | 7.064 | 2.127 | -0.714 | 35 | 29 | 6 |
LYAR | 4.775 | 2.242 | -1.301 | 45 | 75 | -30 |
HMGB2 | 6.67 | -0.737 | -2.214 | 3 | 66 | -63 |
MAFB | 5.29 | -2.433 | -1.844 | 32 | 95 | -63 |
E2F3 | 4.673 | 0.238 | -2.131 | 7 | 80 | -73 |
SSRP1 | 7.323 | 1.431 | -2.081 | 44 | 128 | -84 |
MAF | 5.527 | 0.495 | -2.282 | 20 | 124 | -104 |