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Table 2 List of TFs-HRi from TCGA-STAD analysis. Here we have the Transcript Factors (TF) found as playing an important role in the given comparison. Also shown is the mean of expression (avgexpr) for each TF, in addition to the values of the metrics RIF1 and RIF2. Finally, freq.NT and frep.TP columns represent the frequency of appearance of the given TF in each condition, with freq.diff being the difference between these frequencies. A positive difference means that TF plays an important role in the reference condition in the NT case, whereas a negative difference means that TF plays an important role in the condition TP

From: CeTF: an R/Bioconductor package for transcription factor co-expression networks using regulatory impact factors (RIF) and partial correlation and information (PCIT) analysis

TF avgexpr RIF1 RIF2 freq.NT freq.TP freq.diff
SETD3 5.854 1.409 2.189 162 13 149
HOXB3 4.309 0.517 2.282 159 14 145
RNF115 4.96 -2.324 1.64 153 19 134
TOX4 6.183 2.345 1.63 139 9 130
ASCL2 3.96 2.179 0.678 147 18 129
FOXA1 5.597 -0.801 2.022 159 34 125
SOX4 7.281 3.554 1.072 149 29 120
CSDE1 8.816 -0.069 2.153 172 53 119
TEAD3 5.903 -0.225 2.031 157 46 111
VEZF1 6.211 -0.385 2.243 157 47 110
TERF1 4.853 -2.475 0.902 123 17 106
RBBP7 7.086 2.393 1.872 147 42 105
BBX 6.22 -0.314 2.09 154 55 99
ECD 5.17 3.16 0.778 115 20 95
SPDEF 3.749 -2.081 1.078 114 20 94
TULP3 5.059 0.698 2.012 152 58 94
TRIM16 5.74 -2.266 0.721 127 35 92
ZBTB7C 3.999 -3.093 0.824 122 30 92
NFX1 5.733 3.149 0.852 96 13 83
TP53 6.305 -2.016 -0.005 89 8 81
NFE2L3 6.01 2.484 1.068 175 112 63
TSC22D4 5.989 -1.976 -0.106 72 9 63
AFF4 7.147 2.486 0.539 89 27 62
ELF1 6.758 -2.384 -0.09 76 16 60
VTN 1.905 -2.277 0.02 66 13 53
ADNP2 5.251 2.319 0.311 79 29 50
KLF4 6.519 -3.313 -0.297 73 24 49
CDC5L 5.794 2.845 -0.058 69 36 33
KLF6 7.737 -2.584 -1.222 31 10 21
PER1 5.694 2.051 0.866 127 115 12
MYC 7.064 2.127 -0.714 35 29 6
LYAR 4.775 2.242 -1.301 45 75 -30
HMGB2 6.67 -0.737 -2.214 3 66 -63
MAFB 5.29 -2.433 -1.844 32 95 -63
E2F3 4.673 0.238 -2.131 7 80 -73
SSRP1 7.323 1.431 -2.081 44 128 -84
MAF 5.527 0.495 -2.282 20 124 -104