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Fig. 5 | BMC Genomics

Fig. 5

From: High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing

Fig. 5

Repeats and genes in the chosen assembly. a Classification and counts of de novo repeat families trained on Canu. b Partition of Canu into the major repeat categories (DNA = DNA transposons). c Major sub-classes of repeats in each repeat class in Canu when masking with different repeat libraries. Boxes with asterisks are all other sub-classes. d Number of bases masked by the Escribá insert [23] compared to all masked bases. e Characterization of the Escribá insert, highlighting major repeats in the Sciara genome. Black arrowhead on right pointing to repeat classes legend corresponds only to the two repeat family rows. F4 = ScRTE probe in Escribá et al. [23]. RT = reverse transcriptase. GP = gag-pol. f Ranking results of the final two assemblies showing the number of metrics in each category each assembler scored better on. g Distributions of log2 male/female transcript abundance ratios for X (red) and autosomes (blue) across multiple life stages

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BMC Genomics

ISSN: 1471-2164

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