Skip to main content

Table 1 Genome sequencing datasets for Sciara coprophila

From: High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing

 

Illumina HiSeq 2000

PacBio RSII

Oxford Nanopore MinION MkI

BioNano Genomics Irys

Source

Male Embryos

Male Embryos

Male Embryosa

Male pupae

Library

Paired-Enda

SMRTBell

MAP002-006 (2D)

IrysPrep

Details

–

P5-C3

Pores R7.3-R7.3 70 bps 6mer

BssSI

Read Length N50 (kb)

0.1

9.681

9.934

132.613

Mean Read Length (kb)

0.1

6.607

5.883

62.531

Count

301,513,554

1,949,427

532,714

1,628,681

Span (Gb)

30.15

12.88

3.15

101.84

Coverage > 0 kb

103.26

44.11

10.77

348.78

> 20 kb

0

1.28

2.91

330.22

> 30 kb

0

0.01

1.72

323.31

> 50 kb

0

0

0.71

303.02

> 100 kb

0

0

0.28

226.1

> 150 kb

0

0

0.2

148.5

  1. aA minority of the Nanopore data came from male adults (see Methods)