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Fig. 4 | BMC Genomics

Fig. 4

From: SCYN: single cell CNV profiling method using dynamic programming

Fig. 4

Performance of SCYN on T16. (A) Whole genome CNV heatmap, aggregated group CNV heatmap, and aggregated group CNV stairstep of T16. The colorbar (blue, white, dark red) represents the value of copy number from 0 to ≥10, respectively. N/A denotes the missing of copy number in corresponding genomic region. An interactive visualization is available on scSVAS [42] (https://sc.deepomics.org/oviz-project/analyses/view) with demo set “TNBC_T16”. (B-C) Pearson correlation and root mean square error (RMSE) as evaluation metrics comparing results by SCYN and SCOPE against golden standard aGCH, respectively

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