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Table 2 SNPs, chromosomal position and candidate genes significantly associated with root hair trait identified by GWAS using MLM

From: Genome-wide association study reveals the genetic architecture of root hair length in maize

Chr Position (bp) Allele R2 (%)a MAFb P-value Gene Gene interval (bp) Annotation
1 55388394 T/C 8.0 0.08 5.16E-06 GRMZM2G100288 55388285–55391652 Receptor-like protein kinase (FERONIA)
2 148870290 C/T 10.1 0.09 9.39E-07 GRMZM2G147446 148863858–148867640 UDP-rhamnose/UDP-galactose transporter 5
2 229021546 G/A 9.3 0.07 5.81E-06 GRMZM2G078013 229020754–229026704 NBS-LRR disease resistance protein
4 20054633 C/G 6.3 0.06 4.79E-06 GRMZM2G064644 20054312–20054951 ROP-interactive CRIB motif-containing protein (RIC2)
4 34337601 C/T 9.3 0.07 1.15E-06 GRMZM2G000471 34335083–34336530 Aquaporin NIP5–1
5 198197360 A/C 9.8 0.05 1.80E-07 GRMZM2G044851 198193875–198198340 Nitrate transporter 1.5
6 5509266 A/G 7.4 0.05 3.65E-06 AC193598.3_FG002 5503430–5507323 NBS-LRR disease resistance protein
6 34221678 T/A 9.0 0.08 1.70E-07 GRMZM2G403003 34217717–34222233 TON1 recruiting motif 19 (TRM19)
6 75630277 A/G 9.7 0.06 3.97E-07 GRMZM5G825276 75630353–75630906 GDSL-like lipase
10 2049694 C/A 9.2 0.16 2.00E-06 GRMZM2G180244 2049440–2055121 NBS-LRR disease resistance protein
10 138881367 T/G 9.9 0.29 9.85E-07 GRMZM2G091579 138880717–138881634 Uncharacterized protein
  1. a Percentage of phenotypic variation explained by the additive effect of the single significant SNP
  2. b Minor allele of frequency