Table 2 SNPs, chromosomal position and candidate genes significantly associated with root hair trait identified by GWAS using MLM
From: Genome-wide association study reveals the genetic architecture of root hair length in maize
Chr | Position (bp) | Allele | R2 (%)a | MAFb | P-value | Gene | Gene interval (bp) | Annotation |
|---|---|---|---|---|---|---|---|---|
1 | 55388394 | T/C | 8.0 | 0.08 | 5.16E-06 | GRMZM2G100288 | 55388285–55391652 | Receptor-like protein kinase (FERONIA) |
2 | 148870290 | C/T | 10.1 | 0.09 | 9.39E-07 | GRMZM2G147446 | 148863858–148867640 | UDP-rhamnose/UDP-galactose transporter 5 |
2 | 229021546 | G/A | 9.3 | 0.07 | 5.81E-06 | GRMZM2G078013 | 229020754–229026704 | NBS-LRR disease resistance protein |
4 | 20054633 | C/G | 6.3 | 0.06 | 4.79E-06 | GRMZM2G064644 | 20054312–20054951 | ROP-interactive CRIB motif-containing protein (RIC2) |
4 | 34337601 | C/T | 9.3 | 0.07 | 1.15E-06 | GRMZM2G000471 | 34335083–34336530 | Aquaporin NIP5–1 |
5 | 198197360 | A/C | 9.8 | 0.05 | 1.80E-07 | GRMZM2G044851 | 198193875–198198340 | Nitrate transporter 1.5 |
6 | 5509266 | A/G | 7.4 | 0.05 | 3.65E-06 | AC193598.3_FG002 | 5503430–5507323 | NBS-LRR disease resistance protein |
6 | 34221678 | T/A | 9.0 | 0.08 | 1.70E-07 | GRMZM2G403003 | 34217717–34222233 | TON1 recruiting motif 19 (TRM19) |
6 | 75630277 | A/G | 9.7 | 0.06 | 3.97E-07 | GRMZM5G825276 | 75630353–75630906 | GDSL-like lipase |
10 | 2049694 | C/A | 9.2 | 0.16 | 2.00E-06 | GRMZM2G180244 | 2049440–2055121 | NBS-LRR disease resistance protein |
10 | 138881367 | T/G | 9.9 | 0.29 | 9.85E-07 | GRMZM2G091579 | 138880717–138881634 | Uncharacterized protein |