Table 4 High-confidence mappings with genomes of Miscanthus sinensis and other four closely related plant species
Data type | Oryza sativa | Zea mays | Sorghum bicolor | Saccharum Spontaneum L | Miscanthus sinensis |
|---|---|---|---|---|---|
PacBio B0605 FLNCs | 210,330 (35.23 %) | 463,741 (77.67 %) | 478,942 (80.22 %) | 557,818 (93.43 %) | 593,760 (99.45 %) |
PacBio C0542 FLNCs | 203,587 (34.92 %) | 450,169 (77.20 %) | 464,189 (79.61 %) | 545,601 (93.57 %) | 581,923 (99.80 %) |
Illumina B0605-1 Clean reads | 330,754 (0.7 %) | 6380,120 (13.5 %) | 14,542,559 (30.7 %) | 21,550,628 (45.6 %) | 40,558,657 (85.82 %) |
Illumina B0605-2 Clean reads | 269,976 (0.6 %) | 5,476,174 (12.9 %) | 13,253,089 (31.1 %) | 19,582,421 (46.0 %) | 36,776,636 (86.39 %) |
Illumina C0542-1 Clean reads | 331,302 (0.8 %) | 5,896,040 (13.8 %) | 13,689,017 (31.9 %) | 20,256,499 (47.3 %) | 37,048,408 (86.51 %) |
Illumina C0542-2 Clean reads | 313,718 (0.7 %) | 5,466,749 (12.3 %) | 14,044,656 (31.6 %) | 20,917,089 (47.0 %) | 38,727,765 (87.02 %) |
All transcripts | 41,125 (10.06 %) | 196,184 (47.99 %) | 255,460 (62.49 %) | 325,896 (79.72 %) | 395,065 (96.64 %) |