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Table 1 Summary of the RNA-Seq, de novo assembly, and APV1 isolate data of areca palm YLD samples

From: Genomic diversity of Areca Palm Velarivirus 1 (APV1) in Areca palm (Areca catechu) plantations in Hainan, China

Sample Clean reads Clean bases Q30 (%) GC (%) Unigenes APV1 unigenes Longest APV1 unigenes APV1 isolates identified
Control 112,977,362 16.95G 93.36 43.5 322,485 0 0  
BTMT1 109,014,442 16.35G 93.64 44.25 375,447 9 17,448 nt BTMT1
BTZL1 111,153,834 16.67G 93.48 44.3 307,293 8 17,440 nt BTZL1
LDTT1 114,521,988 17.18G 93.57 43.84 409,421 9 17,515 nt LDTT1
LDTT2 95,489,440 14.32G 93.3 43.96 360,780 9 17,530 nt LDTT2
LSGP1 92,771,398 13.92G 93.44 44.37 273,553 26 9318 nt LSGP1–1; LSGP1–2; LSGP1–3
LSGP2 97,687,560 14.65G 93.52 43.72 290,986 8 17,482 nt LSGP2
QHDH1 89,537,286 13.43G 94.09 44.53 324,586 13 17,435 nt QHDH1
QHDH4 80,108,502 12.02G 93.64 44.03 260,972 13 17,438 nt QHDH4
QHZY1 87,295,496 13.09G 93.78 45.27 322,034 13 17,481 nt QHZY1
QHZY2 95,210,422 14.28G 93.76 43.87 318,040 12 17,438 nt QHZY2
TCFM1 115,107,346 17.27G 93.56 44.96 363,079 9 17,501 nt TCFM1
WNCF1 98,937,520 14.84G 93.25 43.77 345,757 31 8866 nt WNCF1–1, 1–2, and 1–3
WNLG1 122,943,318 18.44G 93.42 44.19 338,253 8 17,437 nt WNLG1
WNSG1 82,280,618 12.34G 93.46 44.38 312,624 6 17,434 nt WNSG1
WNXL1 98,334,604 14.75G 93.14 43.7 394,940 31 17,482 nt WNXL1–1, WNXL1–2