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Table 1 Summary of the RNA-Seq, de novo assembly, and APV1 isolate data of areca palm YLD samples

From: Genomic diversity of Areca Palm Velarivirus 1 (APV1) in Areca palm (Areca catechu) plantations in Hainan, China

Sample

Clean reads

Clean bases

Q30 (%)

GC (%)

Unigenes

APV1 unigenes

Longest APV1 unigenes

APV1 isolates identified

Control

112,977,362

16.95G

93.36

43.5

322,485

0

0

 

BTMT1

109,014,442

16.35G

93.64

44.25

375,447

9

17,448 nt

BTMT1

BTZL1

111,153,834

16.67G

93.48

44.3

307,293

8

17,440 nt

BTZL1

LDTT1

114,521,988

17.18G

93.57

43.84

409,421

9

17,515 nt

LDTT1

LDTT2

95,489,440

14.32G

93.3

43.96

360,780

9

17,530 nt

LDTT2

LSGP1

92,771,398

13.92G

93.44

44.37

273,553

26

9318 nt

LSGP1–1; LSGP1–2; LSGP1–3

LSGP2

97,687,560

14.65G

93.52

43.72

290,986

8

17,482 nt

LSGP2

QHDH1

89,537,286

13.43G

94.09

44.53

324,586

13

17,435 nt

QHDH1

QHDH4

80,108,502

12.02G

93.64

44.03

260,972

13

17,438 nt

QHDH4

QHZY1

87,295,496

13.09G

93.78

45.27

322,034

13

17,481 nt

QHZY1

QHZY2

95,210,422

14.28G

93.76

43.87

318,040

12

17,438 nt

QHZY2

TCFM1

115,107,346

17.27G

93.56

44.96

363,079

9

17,501 nt

TCFM1

WNCF1

98,937,520

14.84G

93.25

43.77

345,757

31

8866 nt

WNCF1–1, 1–2, and 1–3

WNLG1

122,943,318

18.44G

93.42

44.19

338,253

8

17,437 nt

WNLG1

WNSG1

82,280,618

12.34G

93.46

44.38

312,624

6

17,434 nt

WNSG1

WNXL1

98,334,604

14.75G

93.14

43.7

394,940

31

17,482 nt

WNXL1–1, WNXL1–2