Table 3 Recombination events predicted by RDP4 in the full genomes of the 22 APV1 isolates
Event No. | Recombination | Major parent | Minor parent | Detection methods | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
R | G | B | M | C | S | T | ||||
1 | LSGP1–1 | BTZL1 | Unknown (WNLG1) | + | + | – | – | – | – | – |
2 | LSGP1–2 | LSGP1–1 | Unknown (WNXL1–2) | – | + | – | + | + | – | + |
3 | LSGP1–3 | WNY | LSGP1–1 | – | + | – | – | – | + | + |
4 | LSGP1–3 | Unknown (TCFM1) | BTY | + | + | – | – | – | – | – |
5 | LSGP1–3 | WNY | BTY | + | + | – | + | + | + | + |
6 | LSGP2 | WNXL1–1 | QHZY1 | + | + | – | + | + | – | – |
7 | QHDH4 | QHZY1 | QHDH1 | – | – | – | + | + | – | – |
8 | QHZY1 | LSGP2 | Unknown (QHDH1) | – | – | – | + | + | – | – |
9 | TCFM1 | BTZL1 | WNY | + | – | – | + | + | – | – |
10 | WNCF1–1 | WNXL1–1 | Unknown (QHZY1) | – | – | – | + | – | – | + |
11 | WNCF1–2 | WNCF1–3 | BTY | + | + | – | + | + | + | + |
12 | WNCF1–3 | WNY | LSGP2 | + | + | – | + | + | + | + |
13 | WNCF1–3 | Unknown (WNLG1) | WNCF1–1 | + | + | – | + | + | – | – |
14 | WNCF1–3 | WNY | WNXL1–1 | + | + | – | + | + | – | – |
15 | WNCF1–3 | WNY | WNXL1–1 | + | + | – | + | – | + | – |
16 | WNSG1 | LDTT1 | BTZL1 | + | – | – | + | + | – | – |
17 | WNXL1–2 | WNY | WNXL1–1 | + | – | – | – | – | + | – |
18 | WNXL1–2 | Unknown (TCFM1) | WNXL1–1 | + | + | – | – | – | + | – |
19 | WNXL1–2 | Unknown (QHDH1) | WNXL1–1 | + | + | – | – | – | – | – |
20 | WNXL1–2 | WNY | LSGP2 | + | + | – | + | + | + | + |