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Table 1 Functional classification of some differentially expressed genes (DEGs) in Isatidis Radix

From: Integrative analyses of targeted metabolome and transcriptome of Isatidis Radix autotetraploids highlighted key polyploidization-responsive regulators

Polyploidy-upregulated Polyploidy-downregulated
Gene ID Log2FC Annotation Gene ID Log2FC Annotation
Stress
  Iin06055 2.2 Temperature-induced lipocalin-1 Iin16550 -1.7 Universal stress protein A-like protein
  Iin07195 6.1  L-ascorbate peroxidase S, chloroplastic/mitochondrial Iin20218 -1.6 Thioredoxin H2
  Iin08766 1.2 Trehalose-phosphate synthase TPS7 Iin26513 -1.2 Gamma carbonic anhydrase CAL2, mitochondrial
  Iin11872 3.9 Cysteine proteinase RD21A Iin28989 -2.2 Polyadenylate-binding protein PABP-2
  Iin26982 1.5 Bifunctional enolase 2/transcriptional activator Iin02876 -3.6 Jacalin-related lectin 35
  Iin27472 1.8 Galactinol–sucrose galactosyltransferase 2 Iin24588 -1.2 Glutathione S-transferase DHAR2
  Iin21449 1.2 Senescence/dehydration-associated protein, chloroplastic    
  Iin15549 3.8 Universal stress protein A-like protein    
Growth and development
  Iin01550 5.7 Light-regulated protein 1, chloroplastic Iin18645 -1.6 Arogenate dehydratase PDT1, chloroplastic
  Iin10290 2.2 Protein GIGANTEA Iin05822 -1.3 Adenylate kinase isoenzyme 6 homolog
  Iin15495 2.5 Mediator of RNA polymerase II transcription subunit 37c Iin10029 -3.7 Auxin-responsive protein SAUR50
  Iin02027 1.7 HAIKU1/VQ14 Iin11047 -1.7 Rop guanine nucleotide exchange factor 14
  Iin13953 3.2 Glycine-rich protein 3 Iin12932 -3.2 Profilin-1
  Iin00462 2.9 BTB/POZ and TAZ domain-containing protein 1 Iin23516 -1.2 Rac-like GTP-binding protein ARAC3
  Iin04656 3.7 MADS-box protein FLOWERING LOCUS C Iin00261 -1.2 Agamous-like MADS-box protein AGL31
  Iin05649 2.0 Nucleolin 1 Iin07151 -2.7 DNA (cytosine-5)-methyltransferase 1
  Iin08418 4.8 E3 ubiquitin ligase SUD1 Iin12525 -11.7 Uracil phosphoribosyltransferase, chloroplastic
  Iin09123 1.8 Receptor-like protein kinase HAIKU2 Iin17933 -1.1 Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic
  Iin09717 2.5 Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic Iin19209 -1.3 UDP-sugar pyrophosphorylase
  Iin15883 1.5 Phosphoinositide PLC2 Iin25514 -1.6 Zinc finger protein 6
    Iin27501 -1.3 SUMO-conjugating enzyme SCE1
    Iin29572 -1.9 Adenosylhomocysteinase 1
Kinase and signaling
  Iin26824 1.2 Receptor-like protein kinase FERONIA Iin17733 -2.2 LRR receptor-like protein kinase PXC1
  Iin19551 1.7 Wall-associated receptor kinase, WAK14 Iin01347 -1.1 Histidine-containing phosphotransfer protein 2
  Iin24110 6.0 Mitogen-activated protein kinase, MPK19 Iin03883 -1.6 Phosphoglucan, water dikinase, chloroplastic
  Iin27283 1.2 receptor-like protein kinase Iin10356 -7.3 Hexokinase-like 1 protein
  Iin29680 4.3 LRR receptor-like kinase Iin28764/ Iin30061 -1.6 RPM1-interacting protein 4
  Iin01264 1.0 LRR receptor-like kinase Iin22433 -5.3 F-box protein GID2
  Iin00785 2.2 Remorin Iin29325 -2.2 Auxin-responsive protein IAA7
  Iin01090 1.8 Gibberellin receptor GID1C Iin05103 -1.7 Gibberellin-regulated protein 4
  Iin07657 3.1 Copper amine oxidase Iin06703/ Iin21095 -1.1 Small acidic protein 1
Transporter
  Iin01771 2.7 Glutathione S-transferase, GSTZ1 Iin22173 -1.7 Calcium permeable stress-gated cation channel, CSC1
  Iin04670 1.6 Ras-related protein, RABH1e Iin11860 -1.3 ABC transporter A family, ABCA4
  Iin26854 2.3 Sulfate transporter, AST12 Iin04029 -1.3 Membrane magnesium transporter
  Iin10902 1.8 CSC1-like protein, ERD4 Iin28450 -0.8 Mitochondrial phosphate carrier protein, MPT3
  Iin01411 2.2 AAA-ATPase Iin22985 -5.9 Venom phosphodiesterase
  Iin27921/ Iin23995 1.6 ABC transporter C family, ABCG14/36    
  Iin23984 1.1 Amino acid transporter, AVT3C    
  1. Log2FC means log2(FPKM-tetraploid/FPKM-diploid). FPKM means the fragments per kilobase transcript per million reads mapped by RNAseq analysis