Table 1 Functional classification of some differentially expressed genes (DEGs) in Isatidis Radix

Stress

  Iin06055

2.2

Temperature-induced lipocalin-1

Iin16550

-1.7

Universal stress protein A-like protein

  Iin07195

6.1

 L-ascorbate peroxidase S, chloroplastic/mitochondrial

Iin20218

-1.6

Thioredoxin H2

  Iin08766

1.2

Trehalose-phosphate synthase TPS7

Iin26513

-1.2

Gamma carbonic anhydrase CAL2, mitochondrial

  Iin11872

3.9

Cysteine proteinase RD21A

Iin28989

-2.2

Polyadenylate-binding protein PABP-2

  Iin26982

1.5

Bifunctional enolase 2/transcriptional activator

Iin02876

-3.6

Jacalin-related lectin 35

  Iin27472

1.8

Galactinol–sucrose galactosyltransferase 2

Iin24588

-1.2

Glutathione S-transferase DHAR2

  Iin21449

1.2

Senescence/dehydration-associated protein, chloroplastic

  Iin15549

3.8

Universal stress protein A-like protein

Growth and development

  Iin01550

5.7

Light-regulated protein 1, chloroplastic

Iin18645

-1.6

Arogenate dehydratase PDT1, chloroplastic

  Iin10290

2.2

Protein GIGANTEA

Iin05822

-1.3

Adenylate kinase isoenzyme 6 homolog

  Iin15495

2.5

Mediator of RNA polymerase II transcription subunit 37c

Iin10029

-3.7

Auxin-responsive protein SAUR50

  Iin02027

1.7

HAIKU1/VQ14

Iin11047

-1.7

Rop guanine nucleotide exchange factor 14

  Iin13953

3.2

Glycine-rich protein 3

Iin12932

-3.2

Profilin-1

  Iin00462

2.9

BTB/POZ and TAZ domain-containing protein 1

Iin23516

-1.2

Rac-like GTP-binding protein ARAC3

  Iin04656

3.7

MADS-box protein FLOWERING LOCUS C

Iin00261

-1.2

Agamous-like MADS-box protein AGL31

  Iin05649

2.0

Nucleolin 1

Iin07151

-2.7

DNA (cytosine-5)-methyltransferase 1

  Iin08418

4.8

E3 ubiquitin ligase SUD1

Iin12525

-11.7

Uracil phosphoribosyltransferase, chloroplastic

  Iin09123

1.8

Receptor-like protein kinase HAIKU2

Iin17933

-1.1

Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic

  Iin09717

2.5

Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic

Iin19209

-1.3

UDP-sugar pyrophosphorylase

  Iin15883

1.5

Phosphoinositide PLC2

Iin25514

-1.6

Zinc finger protein 6

Iin27501

-1.3

SUMO-conjugating enzyme SCE1

Iin29572

-1.9

Adenosylhomocysteinase 1

Kinase and signaling

  Iin26824

1.2

Receptor-like protein kinase FERONIA

Iin17733

-2.2

LRR receptor-like protein kinase PXC1

  Iin19551

1.7

Wall-associated receptor kinase, WAK14

Iin01347

-1.1

Histidine-containing phosphotransfer protein 2

  Iin24110

6.0

Mitogen-activated protein kinase, MPK19

Iin03883

-1.6

Phosphoglucan, water dikinase, chloroplastic

  Iin27283

1.2

receptor-like protein kinase

Iin10356

-7.3

Hexokinase-like 1 protein

  Iin29680

4.3

LRR receptor-like kinase

Iin28764/ Iin30061

-1.6

RPM1-interacting protein 4

  Iin01264

1.0

LRR receptor-like kinase

Iin22433

-5.3

F-box protein GID2

  Iin00785

2.2

Remorin

Iin29325

-2.2

Auxin-responsive protein IAA7

  Iin01090

1.8

Gibberellin receptor GID1C

Iin05103

-1.7

Gibberellin-regulated protein 4

  Iin07657

3.1

Copper amine oxidase

Iin06703/ Iin21095

-1.1

Small acidic protein 1

Transporter

  Iin01771

2.7

Glutathione S-transferase, GSTZ1

Iin22173

-1.7

Calcium permeable stress-gated cation channel, CSC1

  Iin04670

1.6

Ras-related protein, RABH1e

Iin11860

-1.3

ABC transporter A family, ABCA4

  Iin26854

2.3

Sulfate transporter, AST12

Iin04029

-1.3

Membrane magnesium transporter

  Iin10902

1.8

CSC1-like protein, ERD4

Iin28450

-0.8

Mitochondrial phosphate carrier protein, MPT3

  Iin01411

2.2

AAA-ATPase

Iin22985

-5.9

Venom phosphodiesterase

  Iin27921/ Iin23995

1.6

ABC transporter C family, ABCG14/36

  Iin23984

1.1

Amino acid transporter, AVT3C