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Table 2 Polyploidy-altered transcriptional factors in Isatidis Radix

From: Integrative analyses of targeted metabolome and transcriptome of Isatidis Radix autotetraploids highlighted key polyploidization-responsive regulators

Name Diploid Tetraploid Log2FC ID Chromosome Start End Strand Annotation
ARF14 7.2 62.6 3.2 Iin01634 Lachesis_group0 8,536,701 8,537,541 - AP2/ERF and B3 domain
RAV2 2.1 13.4 2.8 Iin25260 Lachesis_group6 7,129,978 7,131,110 - AP2/ERF and B3 domain
bZIP40 29.1 61.9 1.1 Iin02491 Lachesis_group0 15,255,544 15,256,922 + bZIP transcription factor
CDC5 8.7 24.3 1.5 Iin13523 Lachesis_group3 7,021,761 7,028,721 - Cell division cycle 5-like
ERF36 90.0 19.1 -2.2 Iin15129 Lachesis_group3 27,555,240 27,555,962 - Ethylene-responsive factor
ERF55 3.2 16.5 2.4 Iin11510 Lachesis_group2 20,968,841 20,969,965 - Ethylene-responsive factor
ERF70 166.1 56.9 -1.5 Iin24996 Lachesis_group6 5,265,430 5,265,968 - Ethylene-responsive factor
HsfA1a 10.9 2.4 -2.2 Iin10321 Lachesis_group2 10,028,288 10,028,973 + Heat stress transcription factor
HsfB2b 4.8 10.2 1.1 Iin07593 Lachesis_group1 30,892,038 30,894,605 + Heat stress transcription factor
REV 3.5 22.5 2.8 Iin02879 Lachesis_group0 24,168,399 24,168,936 + Homeobox-leucine zipper
NAC41 76.6 8.8 -3.2 Iin18045 Lachesis_group4 8,178,123 8,179,515 - NAC domain-containing
NAC29 1.9 169.4 6.5 Iin25189 Lachesis_group6 6,708,153 6,709,151 - NAC domain-containing
NAC47 4.5 16.4 1.9 Iin16287 Lachesis_group3 33,189,224 33,191,152 + NAC domain-containing
NAC54 5.7 21.9 2.0 Iin19433 Lachesis_group4 29,656,612 29,657,225 + NAC domain-containing
NF-YC-1 16.9 4.2 -2.0 Iin08913 Lachesis_group2 2,970,892 2,972,650 - Nuclear transcription factor
bHLH44 11.2 0.1 -6.9 Iin09913 Lachesis_group2 7,785,960 7,787,812 + Basic helix-loop-helix protein
bHLH129 5.4 14.0 1.4 Iin17039 Lachesis_group4 2,495,161 2,499,719 + Basic helix-loop-helix protein
bHLH130 2.0 23.3 3.6 Iin17124 Lachesis_group4 2,983,700 2,986,470 + Basic helix-loop-helix protein
bHLH63 7.0 14.7 1.1 Iin23473 Lachesis_group5 35,187,500 35,189,238 + Basic helix-loop-helix protein
GTE4 21.1 76.8 1.9 Iin08753 Lachesis_group2 2,302,922 2,306,873 + Transcription factor GTE4
Myb51 6.5 31.6 2.3 Iin09927 Lachesis_group2 7,849,190 7,851,367 + MYB Transcription factor
Myb59 19.5 317.8 4.0 Iin05872 Lachesis_group1 10,463,654 10,464,989 + MYB Transcription factor
ASIL2 13.6 29.5 1.2 Iin14214 Lachesis_group3 21,584,634 21,585,940 - Trihelix transcription factor
ASR3 14.7 3.5 -2.0 Iin23152 Lachesis_group5 33,490,036 33,491,219 - Arabidopsis SH4-Related3
WRKY16 4.3 18.5 2.2 Iin21936 Lachesis_group5 26,229,642 26,232,137 + WRKY transcription factor
WRKY19 13.1 0.8 -3.9 Iin00005 Lachesis_group0 36,353 38,261 - WRKY transcription factor
  1. The number in the column of Diploid and Tetraploid is the FPKM (fragments per kilobase transcript per million reads mapped) value by RNAseq analysis, and log2FC means log2(FPKM-tetraploid/FPKM-diploid)