Table 2 Polyploidy-altered transcriptional factors in Isatidis Radix
Name | Diploid | Tetraploid | Log2FC | ID | Chromosome | Start | End | Strand | Annotation |
|---|---|---|---|---|---|---|---|---|---|
ARF14 | 7.2 | 62.6 | 3.2 | Iin01634 | Lachesis_group0 | 8,536,701 | 8,537,541 | - | AP2/ERF and B3 domain |
RAV2 | 2.1 | 13.4 | 2.8 | Iin25260 | Lachesis_group6 | 7,129,978 | 7,131,110 | - | AP2/ERF and B3 domain |
bZIP40 | 29.1 | 61.9 | 1.1 | Iin02491 | Lachesis_group0 | 15,255,544 | 15,256,922 | + | bZIP transcription factor |
CDC5 | 8.7 | 24.3 | 1.5 | Iin13523 | Lachesis_group3 | 7,021,761 | 7,028,721 | - | Cell division cycle 5-like |
ERF36 | 90.0 | 19.1 | -2.2 | Iin15129 | Lachesis_group3 | 27,555,240 | 27,555,962 | - | Ethylene-responsive factor |
ERF55 | 3.2 | 16.5 | 2.4 | Iin11510 | Lachesis_group2 | 20,968,841 | 20,969,965 | - | Ethylene-responsive factor |
ERF70 | 166.1 | 56.9 | -1.5 | Iin24996 | Lachesis_group6 | 5,265,430 | 5,265,968 | - | Ethylene-responsive factor |
HsfA1a | 10.9 | 2.4 | -2.2 | Iin10321 | Lachesis_group2 | 10,028,288 | 10,028,973 | + | Heat stress transcription factor |
HsfB2b | 4.8 | 10.2 | 1.1 | Iin07593 | Lachesis_group1 | 30,892,038 | 30,894,605 | + | Heat stress transcription factor |
REV | 3.5 | 22.5 | 2.8 | Iin02879 | Lachesis_group0 | 24,168,399 | 24,168,936 | + | Homeobox-leucine zipper |
NAC41 | 76.6 | 8.8 | -3.2 | Iin18045 | Lachesis_group4 | 8,178,123 | 8,179,515 | - | NAC domain-containing |
NAC29 | 1.9 | 169.4 | 6.5 | Iin25189 | Lachesis_group6 | 6,708,153 | 6,709,151 | - | NAC domain-containing |
NAC47 | 4.5 | 16.4 | 1.9 | Iin16287 | Lachesis_group3 | 33,189,224 | 33,191,152 | + | NAC domain-containing |
NAC54 | 5.7 | 21.9 | 2.0 | Iin19433 | Lachesis_group4 | 29,656,612 | 29,657,225 | + | NAC domain-containing |
NF-YC-1 | 16.9 | 4.2 | -2.0 | Iin08913 | Lachesis_group2 | 2,970,892 | 2,972,650 | - | Nuclear transcription factor |
bHLH44 | 11.2 | 0.1 | -6.9 | Iin09913 | Lachesis_group2 | 7,785,960 | 7,787,812 | + | Basic helix-loop-helix protein |
bHLH129 | 5.4 | 14.0 | 1.4 | Iin17039 | Lachesis_group4 | 2,495,161 | 2,499,719 | + | Basic helix-loop-helix protein |
bHLH130 | 2.0 | 23.3 | 3.6 | Iin17124 | Lachesis_group4 | 2,983,700 | 2,986,470 | + | Basic helix-loop-helix protein |
bHLH63 | 7.0 | 14.7 | 1.1 | Iin23473 | Lachesis_group5 | 35,187,500 | 35,189,238 | + | Basic helix-loop-helix protein |
GTE4 | 21.1 | 76.8 | 1.9 | Iin08753 | Lachesis_group2 | 2,302,922 | 2,306,873 | + | Transcription factor GTE4 |
Myb51 | 6.5 | 31.6 | 2.3 | Iin09927 | Lachesis_group2 | 7,849,190 | 7,851,367 | + | MYB Transcription factor |
Myb59 | 19.5 | 317.8 | 4.0 | Iin05872 | Lachesis_group1 | 10,463,654 | 10,464,989 | + | MYB Transcription factor |
ASIL2 | 13.6 | 29.5 | 1.2 | Iin14214 | Lachesis_group3 | 21,584,634 | 21,585,940 | - | Trihelix transcription factor |
ASR3 | 14.7 | 3.5 | -2.0 | Iin23152 | Lachesis_group5 | 33,490,036 | 33,491,219 | - | Arabidopsis SH4-Related3 |
WRKY16 | 4.3 | 18.5 | 2.2 | Iin21936 | Lachesis_group5 | 26,229,642 | 26,232,137 | + | WRKY transcription factor |
WRKY19 | 13.1 | 0.8 | -3.9 | Iin00005 | Lachesis_group0 | 36,353 | 38,261 | - | WRKY transcription factor |