BMC Genomics

Table 11 Similarity of rohu biological clock gene across different classes of chordates showing extent of conservation

From: Revelation of candidate genes and molecular mechanism of reproductive seasonality in female rohu (Labeo rohita Ham.) by RNA sequencing

Sl No.	Biological Clock Gene Name	Identity in Percentage
Sl No.	Biological Clock Gene Name	PM	RT	DR	CC	XT	GG	AC	OA	MD	OvA
1	Bmal2	100	76	93	94	79	76	74	75	77	76
2	clock	81	78	97	96	81	86	90	83	82	86
3	cry1	100	78	90	81	81	80	79	84	81	80
4	cry2	100	77	90	96	82	82	78	83	84	86
5	foxl2	100	83	86	85	85	90	80	85	85	87
6	GNRH	100	72	92	84	71	75	69	83	75	83
7	kisspeptin	90	91	85	86	93	93	90	85	84	89
8	LH	89	67	76	83	66	68	67	70	67	68
9	PER1	100	72	85	90	81	71	88	77	79	80
10	Per2	100	83	81	89	78	77	81	78	77	78
11	Per3	100	89	88	90	77	91	77	80	85	79
12	esr1a	95	83	84	91	87	86	82	84	84	85
13	PVR	100	77	84	90	73	70	75	74	81	68
14	Bty	94	69	85	87	75	88	77	69	66	70
15	wisp1	100	73	89	85	76	71	75	81	76	77
16	mdka	100	95	84	89	72	81	76	70	89	73
17	amh	88	91	97	87	91	82	83	88	93	91
18	ependymin	100	77	90	92	75	76	76	88	70	72
19	CaMK2	77	81	83	90	85	84	83	82	84	84
20	ehmt1	100	80	89	84	75	77	80	79	75	80
21	ehmt2	100	87	91	88	73	79	77	80	77	80
22	racgap1	100	73	81	85	75	79	76	81	64	77
23	fstl3	100	69	90	87	81	72	93	76	72	80
24	fstl4	93	73	75	92	66	69	83	69	90	74
25	fstl5	89	65	90	89	64	67	67	67	68	67
26	prdm	100	81	72	85	70	75	76	74	71	73
27	Otx	100	70	93	96	73	72	73	81	71	71
28	Myc	100	79	88	93	76	78	77	69	71	80
29	srebf1	100	75	89	87	78	78	76	82	80	75
30	pac	84	85	85	90	84	83	85	84	89	85
31	picalm	93	86	86	92	80	81	80	79	81	83
32	aanat	100	69	88	90	90	76	71	70	69	70

PM: Petromyzon marinus; RT: Rhincodon typus (whale shark); DR: Danio rerio (zebrafish); CC: Cyprinus carpio (common carp); XT: Xenopus tropicalis (tropical clawed frog); GG: Gallus gallus (chicken); AC: Anolis carolinensis (green anole); OA: Ornithorhynchus anatinus (platypus); MD: Monodelphis domestica (gray short-tailed opossum); OvA: Ovis aries (sheep).

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ISSN: 1471-2164

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