Skip to main content

Table 11 Similarity of rohu biological clock gene across different classes of chordates showing extent of conservation

From: Revelation of candidate genes and molecular mechanism of reproductive seasonality in female rohu (Labeo rohita Ham.) by RNA sequencing

Sl No. Biological Clock Gene Name Identity in Percentage
PM RT DR CC XT GG AC OA MD OvA
1 Bmal2 100 76 93 94 79 76 74 75 77 76
2 clock 81 78 97 96 81 86 90 83 82 86
3 cry1 100 78 90 81 81 80 79 84 81 80
4 cry2 100 77 90 96 82 82 78 83 84 86
5 foxl2 100 83 86 85 85 90 80 85 85 87
6 GNRH 100 72 92 84 71 75 69 83 75 83
7 kisspeptin 90 91 85 86 93 93 90 85 84 89
8 LH 89 67 76 83 66 68 67 70 67 68
9 PER1 100 72 85 90 81 71 88 77 79 80
10 Per2 100 83 81 89 78 77 81 78 77 78
11 Per3 100 89 88 90 77 91 77 80 85 79
12 esr1a 95 83 84 91 87 86 82 84 84 85
13 PVR 100 77 84 90 73 70 75 74 81 68
14 Bty 94 69 85 87 75 88 77 69 66 70
15 wisp1 100 73 89 85 76 71 75 81 76 77
16 mdka 100 95 84 89 72 81 76 70 89 73
17 amh 88 91 97 87 91 82 83 88 93 91
18 ependymin 100 77 90 92 75 76 76 88 70 72
19 CaMK2 77 81 83 90 85 84 83 82 84 84
20 ehmt1 100 80 89 84 75 77 80 79 75 80
21 ehmt2 100 87 91 88 73 79 77 80 77 80
22 racgap1 100 73 81 85 75 79 76 81 64 77
23 fstl3 100 69 90 87 81 72 93 76 72 80
24 fstl4 93 73 75 92 66 69 83 69 90 74
25 fstl5 89 65 90 89 64 67 67 67 68 67
26 prdm 100 81 72 85 70 75 76 74 71 73
27 Otx 100 70 93 96 73 72 73 81 71 71
28 Myc 100 79 88 93 76 78 77 69 71 80
29 srebf1 100 75 89 87 78 78 76 82 80 75
30 pac 84 85 85 90 84 83 85 84 89 85
31 picalm 93 86 86 92 80 81 80 79 81 83
32 aanat 100 69 88 90 90 76 71 70 69 70
  1. PM: Petromyzon marinus; RT: Rhincodon typus (whale shark); DR: Danio rerio (zebrafish); CC: Cyprinus carpio (common carp); XT: Xenopus tropicalis (tropical clawed frog); GG: Gallus gallus (chicken); AC: Anolis carolinensis (green anole); OA: Ornithorhynchus anatinus (platypus); MD: Monodelphis domestica (gray short-tailed opossum); OvA: Ovis aries (sheep).
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us