Skip to main content

Table 2 General features of nine oedogonialean chloroplast genomes

From: Chloroplast genomes of five Oedogonium species: genome structure, phylogenetic analysis and adaptive evolution

Genomic Feature

O. prescottii

O. carolinianum (FACHB-2453)

O. carolinianum

Oe. cardiacum

Oe. dentireticulatum

Oe. crispum

Oe.sp.

(FACHB-3311)

Oe. capilliforme

Oe.sp.

(FACHB-3313)

Size (bp)

 Total

154,9 78

200,832

204,438

196,547

159,341

146,367

187,104

195,349

179,946

 IR

12,808

22,275

23,748

35,492

19,159

13,284

25,841

35,138

26,999

 LSC

80,821

98,462

98,887

80,363

77,718

76,475

86,403

80,003

80,347

 SSC

48,542

57,820

58,055

45,200

43,305

43,324

49,019

45,070

45,601

 A + T(%)

72.66

70.51

70.2

70.5

71.46

72.28

69.98

70.64

71.23

 Coding proportiona

67.0%

52.7%

51.4%

55.9%

64.1%

69.5%

54.8%

52.8%

55.9%

 Gene (+/−)bc

49/60

50/61

50/61

52/63

50/59

50/61

49/60

49/60

50/61

 Protein-coding genes(number/proportion)

68

29/43

68

28/44

68

28/44

70

31/45

68

29/43

68

29/43

68

29/43

68

29/43

68

29/43

 rRNA(number/proportion)

3

3

3

3

3/3

3/3

3/3

3/3

3/3

 tRNA(number/proportion)

28

17/14

30

19/14

30

19/14

29

18/15

29

18/14

29

18/15

28

17/14

28

17/14

29

18/15

 Introns

6

15

17

21

22

8

37

24

30

 Group I (no.)

1

5

7

17

18

4

26

20

25

 Group II (no.)

5

10

10

4

4

4

11

4

5

 Repeatsd(%)

4.8

8.9

11.3

1.3

3.9

4.0

4.7

3.3

4.9

 Accession number

MT364368

MT364369

NC_031510

EU677193

MW250871

MW250872

MW250873

MW250874

MW250875

  1. aThe coding proportion only includes all annotated protein-, rRNA-, and tRNA-coding regions; bGene and CDS numbers do not include ORF genes; cThe plus-minus sign means number of genes in plus strain (left side of slash) or minus strain (rightside of slash). dNon-overlapping repeat elements were mapped on each genome with RepeatMasker using as input sequences the repeats ≥30 bp identified with Vmatch