Table 2 Virulence factors presence in samples determined using SRST2 mapping against the Virulence Factor Database

VFG038174

ompA

92.0

17.2

8.6

1062

Acinetobacter baumannii AB0057

outer membrane protein A [Outer membrane protein (CVF776)]

VFG012267

fimB

90.7

2.8

2.0

603

Escherichia coli 536

type 1 fimbriae regulatory protein FimB [Type I fimbriae (CVF426)]

VFG019910

algU

92.6

3.0

7.1

582

Pseudomonas fluorescens SBW25

alternative ECF subfamily sigma factor [Alginate regulation (CVF523)]

VFG033163

fimB

90.7

2.8

0.7

603

Escherichia coli O55:H7 str. CB9615

type 1 fimbriae regulatory protein fimB [Type I fimbriae (CVF426)]

VFG033162

fimB

90.7

2.8

2.0

603

Escherichia coli O127:H6 str. E2348/69

tyrosine recombinase [Type I fimbriae (CVF426)]

VFG038010

ABZJ_00085

92.5

3.5

1.7

570

Acinetobacter baumannii MDR-ZJ06

IS4 family transposase ORF 1 [Capsule (CVF775)]

VFG033166

fimB

90.7

2.8

1.1

603

Escherichia coli O157:H7 str. TW14359

tyrosine recombinase [Type I fimbriae (CVF426)]

VFG033169

fimB

90.7

2.8

0.5

603

Escherichia coli O111:H- str. 11,128

tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]

VFG042090

eprI

97.5

2.1

0.0

240

Escherichia coli O157:H7 str. Sakai

EprI [ETT2 (SS017)]

VFG014223

flgG

90.5

2.1

5.3

786

Pseudomonas fluorescens Pf0–1

hypothetical protein [Flagella (CVF521)]

VFG033168

fimB

90.7

2.8

0.2

603

Escherichia coli O103:H2 str. 12,009

tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]

VFG033178

fimB

90.7

2.8

0.2

603

Escherichia coli O7:K1 str. CE10

tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]

VFG014522

fliN

90.4

2.9

3.6

459

Pseudomonas fluorescens Pf0–1

flagellar motor switch protein [Flagella (CVF521)]

VFG014052

pilJ

95.0

3.3

7.5

2061

Pseudomonas fluorescens Pf0–1

chemotaxis sensory transducer [Type IV pili twitching motility related proteins (CVF519)]

VFG014013

pilG

91.6

2.5

9.4

405

Pseudomonas fluorescens Pf0–1

Response regulator receiver domain protein (CheY) [Type IV pili twitching motility related proteins (CVF519)]

VFG014366

fleQ

92.3

2.7

5.9

1476

Pseudomonas fluorescens Pf0–1

Sigma-54 Specific Transcriptional Regulator, Fis family [Flagella (CVF521)]

VFG012264

fimB

90.7

2.8

0.9

603

Escherichia coli O157:H7 str. EDL933

recombinase involved in phase variation; regulator for fimA [Type I fimbriae (CVF426)]

VFG033181

fimB

90.7

2.8

1.8

603

Escherichia coli O83:H1 str. LF82

Type 1 fimbriae regulatory protein fimB [Type I fimbriae (CVF426)]

VFG036040

cdiB

96.5

1.8

0.3

312

Escherichia coli str. Clone D i2

hypothetical protein [Contact-dependent inhibition CDI system (CVF747)]

VFG000477

rpoS

98.6

3.3

5.0

993

Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

sigma S (sigma 38) factor of RNA polymerase, major sigmafactor during stationary phase [RpoS (VF0112)]

VFG038379

ASA_2470

94.4

1.7

5.3

504

Aeromonas salmonicida subsp. salmonicida A449

hypothetical protein [T6SS (CVF782)]

VFG014915

algU

93.0

3.0

7.2

582

Pseudomonas fluorescens Pf-5

RNA polymerase sigma-70 factor [Alginate regulation (CVF523)]

VFG014600

flhA

90.4

3.1

6.5

2130

Pseudomonas fluorescens Pf0–1

flagellar biosynthesis protein [Flagella (CVF521)]

VFG014625

fleN

90.1

2.3

8.2

822

Pseudomonas fluorescens Pf-5

flagellar synthesis regulator FleN [Flagella (CVF521)]

VFG014916

algU

92.1

3.1

7.3

582

Pseudomonas fluorescens Pf0–1

RNA polymerase sigma-70 factor [Alginate regulation (CVF523)]

VFG033175

fimB

90.7

2.8

0.2

603

Escherichia coli O78:H11:K80 str. H10407

tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]

VFG038025

ABZJ_00086

93.3

3.1

1.0

447

Acinetobacter baumannii MDR-ZJ06

IS4 family transposase ORF 2 [Capsule (CVF775)]

VFG033170

fimB

90.7

2.8

0.4

603

Escherichia coli O26:H11 str. 11,368

tyrosine recombinase [Type I fimbriae (CVF426)]

VFG033171

fimB

90.7

2.8

0.4

603

Escherichia coli O7:K1 str. IAI39

tyrosine recombinase [Type I fimbriae (CVF426)]

VFG043469

SSU98_1513

95.5

1.9

6.9

1308

Streptococcus suis 98HAH33

phosphopyruvate hydratase [Fibronectin-binding protein (AI215)]

VFG043545

ECS88_3547

91.5

4.3

4.7

885

Escherichia coli O45:K1:H7 str. S88

lipoprotein NlpI [NlpI (AI331)]

VFG000871

fimB

90.7

2.8

2.0

603

Escherichia coli CFT073

Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)]

VFG012263

fimB

90.7

2.8

0.5

603

Escherichia coli str. K⁻¹² substr. MG1655

tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]

VFG014756

algD

93.5

3.0

6.9

1317

Pseudomonas fluorescens Pf0–1

UDP-glucose/GDP-mannose dehydrogenase [Alginate biosynthesis (CVF522)]