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Table 2 Virulence factors presence in samples determined using SRST2 mapping against the Virulence Factor Database

From: Metagenomic investigation of potential abortigenic pathogens in foetal tissues from Australian horses

Reference Gene Coverage Depth Divergence Length Organism Description
VFG038174 ompA 92.0 17.2 8.6 1062 Acinetobacter baumannii AB0057 outer membrane protein A [Outer membrane protein (CVF776)]
VFG012267 fimB 90.7 2.8 2.0 603 Escherichia coli 536 type 1 fimbriae regulatory protein FimB [Type I fimbriae (CVF426)]
VFG019910 algU 92.6 3.0 7.1 582 Pseudomonas fluorescens SBW25 alternative ECF subfamily sigma factor [Alginate regulation (CVF523)]
VFG033163 fimB 90.7 2.8 0.7 603 Escherichia coli O55:H7 str. CB9615 type 1 fimbriae regulatory protein fimB [Type I fimbriae (CVF426)]
VFG033162 fimB 90.7 2.8 2.0 603 Escherichia coli O127:H6 str. E2348/69 tyrosine recombinase [Type I fimbriae (CVF426)]
VFG038010 ABZJ_00085 92.5 3.5 1.7 570 Acinetobacter baumannii MDR-ZJ06 IS4 family transposase ORF 1 [Capsule (CVF775)]
VFG033166 fimB 90.7 2.8 1.1 603 Escherichia coli O157:H7 str. TW14359 tyrosine recombinase [Type I fimbriae (CVF426)]
VFG033169 fimB 90.7 2.8 0.5 603 Escherichia coli O111:H- str. 11,128 tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]
VFG042090 eprI 97.5 2.1 0.0 240 Escherichia coli O157:H7 str. Sakai EprI [ETT2 (SS017)]
VFG014223 flgG 90.5 2.1 5.3 786 Pseudomonas fluorescens Pf0–1 hypothetical protein [Flagella (CVF521)]
VFG033168 fimB 90.7 2.8 0.2 603 Escherichia coli O103:H2 str. 12,009 tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]
VFG033178 fimB 90.7 2.8 0.2 603 Escherichia coli O7:K1 str. CE10 tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]
VFG014522 fliN 90.4 2.9 3.6 459 Pseudomonas fluorescens Pf0–1 flagellar motor switch protein [Flagella (CVF521)]
VFG014052 pilJ 95.0 3.3 7.5 2061 Pseudomonas fluorescens Pf0–1 chemotaxis sensory transducer [Type IV pili twitching motility related proteins (CVF519)]
VFG014013 pilG 91.6 2.5 9.4 405 Pseudomonas fluorescens Pf0–1 Response regulator receiver domain protein (CheY) [Type IV pili twitching motility related proteins (CVF519)]
VFG014366 fleQ 92.3 2.7 5.9 1476 Pseudomonas fluorescens Pf0–1 Sigma-54 Specific Transcriptional Regulator, Fis family [Flagella (CVF521)]
VFG012264 fimB 90.7 2.8 0.9 603 Escherichia coli O157:H7 str. EDL933 recombinase involved in phase variation; regulator for fimA [Type I fimbriae (CVF426)]
VFG033181 fimB 90.7 2.8 1.8 603 Escherichia coli O83:H1 str. LF82 Type 1 fimbriae regulatory protein fimB [Type I fimbriae (CVF426)]
VFG036040 cdiB 96.5 1.8 0.3 312 Escherichia coli str. Clone D i2 hypothetical protein [Contact-dependent inhibition CDI system (CVF747)]
VFG000477 rpoS 98.6 3.3 5.0 993 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 sigma S (sigma 38) factor of RNA polymerase, major sigmafactor during stationary phase [RpoS (VF0112)]
VFG038379 ASA_2470 94.4 1.7 5.3 504 Aeromonas salmonicida subsp. salmonicida A449 hypothetical protein [T6SS (CVF782)]
VFG014915 algU 93.0 3.0 7.2 582 Pseudomonas fluorescens Pf-5 RNA polymerase sigma-70 factor [Alginate regulation (CVF523)]
VFG014600 flhA 90.4 3.1 6.5 2130 Pseudomonas fluorescens Pf0–1 flagellar biosynthesis protein [Flagella (CVF521)]
VFG014625 fleN 90.1 2.3 8.2 822 Pseudomonas fluorescens Pf-5 flagellar synthesis regulator FleN [Flagella (CVF521)]
VFG014916 algU 92.1 3.1 7.3 582 Pseudomonas fluorescens Pf0–1 RNA polymerase sigma-70 factor [Alginate regulation (CVF523)]
VFG033175 fimB 90.7 2.8 0.2 603 Escherichia coli O78:H11:K80 str. H10407 tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]
VFG038025 ABZJ_00086 93.3 3.1 1.0 447 Acinetobacter baumannii MDR-ZJ06 IS4 family transposase ORF 2 [Capsule (CVF775)]
VFG033170 fimB 90.7 2.8 0.4 603 Escherichia coli O26:H11 str. 11,368 tyrosine recombinase [Type I fimbriae (CVF426)]
VFG033171 fimB 90.7 2.8 0.4 603 Escherichia coli O7:K1 str. IAI39 tyrosine recombinase [Type I fimbriae (CVF426)]
VFG043469 SSU98_1513 95.5 1.9 6.9 1308 Streptococcus suis 98HAH33 phosphopyruvate hydratase [Fibronectin-binding protein (AI215)]
VFG043545 ECS88_3547 91.5 4.3 4.7 885 Escherichia coli O45:K1:H7 str. S88 lipoprotein NlpI [NlpI (AI331)]
VFG000871 fimB 90.7 2.8 2.0 603 Escherichia coli CFT073 Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)]
VFG012263 fimB 90.7 2.8 0.5 603 Escherichia coli str. K−12 substr. MG1655 tyrosine recombinase/inversion of on/off regulator of fimA [Type I fimbriae (CVF426)]
VFG014756 algD 93.5 3.0 6.9 1317 Pseudomonas fluorescens Pf0–1 UDP-glucose/GDP-mannose dehydrogenase [Alginate biosynthesis (CVF522)]