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Table 1 Statistics of A1 mitogenome assembly by three strategies

From: Breed-specific reference sequence optimized mapping accuracy of NGS analyses for pigs

Methods BLAST_denovo BWA_denovo Denovo
best k 31 99 99
N50 1437 112 1867
consensus length 16,596 16,598 16,607
coverage 99.90% 99.91% 99.96%
polymorphic sites 0 2 193