Table 2 Basic statistics of major human gene annotations
From: Impact of human gene annotations on RNA-seq differential expression analysis
GENCODE | GENCODE-Basic | RefSeq | RefSeq-Curated | NONCODE | |
|---|---|---|---|---|---|
Release | 31 | 31 | 109.20190607 | 109.20190607 | 5 |
# of genes | 60603 | 60603 | 39280 | 28784 | 96308 |
# of transcripts | 226882 | 108243 | 160796 | 73442 | 172216 |
Genomic coverage of exon regions ∗1 | 4.72% | 3.88% | 4.11% | 2.81% | 4.71% |
Avg. # of transcripts per gene | 3.74 | 1.79 | 4.09 | 2.55 | 1.79 |
Avg. percentage of unique exons per gene ∗2 | 85.5% | 89.0% | 70.4% | 75.1% | 95.7% |