Table 3 List of genomic regions of extended homozygosity detected in Shanghai Holstein cattle population

13

39,852,457

41,196,648

1,344,191

120

3

KIZ、NKX2-2、XRN2

2

135,983,904

137,968,708

1,984,804

134

17

ALPL、CAMK2N1、CDA、CDC42、CELA3B、DDOST、ECE1、HP1BP3、KIF17、LOC515042、LOC789612、MIR2284U、MUL1、PINK1、RAP1GAP、SH2D5、ZBTB40

12

30,773,910

33,562,640

2,788,730

117

21

ATP8A2、CDX2、FLT1、GPR12、GSX1、GTF3A、LNX2、MIR2285O-2、MIR2300A、MIR2300B、MTIF3、PDX1、POLR1D、POMP、RNF6、RPL21、SHISA2、SLC46A3、URAD、USP12、WASF3

21

31,435,280

33,563,201

2,127,921

81

17

COMMD4、CSPG4、ETFA、HMG20A、IMP3、ISL2、MAN2C1、MIR631、NEIL1、ODF3L1、PSTPIP1、PTPN9、RCN2、SNUPN、SNX33、TMEM266、TSPAN3

10

18,844,833

21,194,474

2,349,641

98

43

ADCY4、ADPGK、ARIH1、BBS4、CBLN3、CELF6、CHMP4A、CIDEB、DCAF11、DHRS1、FITM1、GMPR2、HEXA、INSYN1、IPO4、IRF9、KHNYN、LTB4R、LTB4R2、MDP1、MIR11989、MIR12031、NEDD8、NFATC4、NOP9、NPTN、NR2E3、NYNRIN、PARP6、PKM、PSME1、PSME2、RABGGTA、REC8、RIPK3、RNF31、SDR39U1、TBC1D21、TGM1、THSD4、TINF2、TM9SF1、TSSK4

23

27,948,371

29,204,475

1,256,104

85

4

MIR12033、OR12D2、TRIM27、UBD

3

123,888,189

124,870,683

982,494

92

10

ASB1、ESPNL、HES6、ILKAP、MIR2902、PER2、SCLY、TRAF3IP1、TWIST2、UBE2F

4

98,248,048

100,380,507

2,132,459

95

5

CHCHD3、EXOC4、MIR2423、MIR320B、PLXNA4

25

15,526,462

16,728,810

1,202,348

91

2

ABCC1、ABCC6

6

107,592,661

108,740,633

1,147,972

58

3

EVC、EVC2、MSX1

21

61,326,146

64,094,599

2,768,453

103

6

AK7、ATG2B、BDKRB1、GSKIP、PAPOLA、VRK1

29

30,857,817

31,924,963

1,067,146

105

8

DCPS、FAM118B、FOXRED1、KIRREL3、RPUSD4、SRPRA、ST3GAL4、TIRAP

1

144,773,205

145,465,387

692,182

49

4

C2CD2、RIPK4、TMPRSS2、ZBTB21

9

99,670,895

101,121,625

1,450,730

85

10

ACAT2、AGPAT4、AIRN、IGF2R、MRPL18、PLG、SLC22A1、SOD2、TCP1、WTAP

19

62,790,612

63,501,716

711,104

48

8

ABCA9、AMZ2、ARSG、MGC134105、PRKAR1A、RGS9、SLC16A6、WIPI1

11

25,226,313

25,905,694

679,381

29

2

PKDCC、MIR12030

20

780,499

2,012,217

1,231,718

70

5

FOXI1、KCNMB1、LCP2、SLIT3、SPDL1

2

139,926,793

140,719,836

793,043

69

0

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