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Table 5 Health-related and Reproduction-related genomic region with mean |iHS| value >2 and associated genes

From: Genome-wide selection signatures detection in Shanghai Holstein cattle population identified genes related to adaption, health and reproduction traits

QTL

Chr

Start (bp)

End (bp)

Mean |iHS| Value

Genes

Health-related

2

92,500,000

93,000,000

2.68

AOX1、AOX2、AOX4、BZW1、CLK1、NIF3L1、ORC2、PPIL3、SGO2

2

92,750,000

93,250,000

2.27

AOX2、AOX4、BZW1、CFLAR、CLK1、NDUFB3、NIF3L1、PPIL3、ORC2

22

11,000,000

11,500,000

2.24

CTDSPL、ITGA9、MIR2367、MIR26A-1、MIR26C、VILL

8

107,500,000

108,000,000

2.22

ALAD、BSPRY、C8H9orf43、CDC26、HDHD3、POLE3、PRPF4、RNF183、RGS3、SLC31A1、SLC31A2

18

10,500,000

11,000,000

2.00

COX4I1、EMC8、IRF8

Reproduction-related

6

78,000,000

78,500,000

2.94

——

13

34,000,000

34,500,000

2.88

SVIL、ZNF438

13

40,000,000

40,500,000

2.67

KIZ

21

28,750,000

29,250,000

2.66

SNRPA1、TARS3、TM2D3

14

30,750,000

31,250,000

2.60

ARFGEF1、COPS5、CSPP1、PPP1R42、SGK3

1

113,500,000

114,000,000

2.20

GMPS

8

66,500,000

67,000,000

2.14

ALG2、COL15A1、SEC61B、TGFBR1

27

1,000,000

1,500,000

2.10

CLN8、MIR10169、MYOM2

6

78,250,000

78,750,000

2.08

——

19

59,750,000

60,250,000

2.06

SLC39A11、SSTR2

14

58,500,000

59,000,000

2.03

——

Health-related and Reproduction-related

2

134,250,000

134,750,000

2.37

CNR2、FUCA1、IFNLR1、IL22RA1、PNRC2、SRSF10

26

2,750,000

3,250,000

2.29

——

16

39,250,000

39,750,000

2.24

EXOSC10、MASP2、SRM、TARDBP

23

28,000,000

28,500,000

2.18

MIR12033、OR12D2、UBD

1

147,000,000

147,500,000

2.15

CFAP410、FAM207A、ITGB2、KRTAP10-2、KRTAP10-8、KRTAP12-2、LOC617218、LOC780781、LRRC3、PFKL、PTTG1IP、SUMO3、TSPEAR、UBE2G2

23

19,000,000

19,500,000

2.02

SUPT3H