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Table 5 Health-related and Reproduction-related genomic region with mean |iHS| value >2 and associated genes

From: Genome-wide selection signatures detection in Shanghai Holstein cattle population identified genes related to adaption, health and reproduction traits

QTL Chr Start (bp) End (bp) Mean |iHS| Value Genes
Health-related 2 92,500,000 93,000,000 2.68 AOX1、AOX2、AOX4、BZW1、CLK1、NIF3L1、ORC2、PPIL3、SGO2
2 92,750,000 93,250,000 2.27 AOX2、AOX4、BZW1、CFLAR、CLK1、NDUFB3、NIF3L1、PPIL3、ORC2
22 11,000,000 11,500,000 2.24 CTDSPL、ITGA9、MIR2367、MIR26A-1、MIR26C、VILL
8 107,500,000 108,000,000 2.22 ALAD、BSPRY、C8H9orf43、CDC26、HDHD3、POLE3、PRPF4、RNF183、RGS3、SLC31A1、SLC31A2
18 10,500,000 11,000,000 2.00 COX4I1、EMC8、IRF8
Reproduction-related 6 78,000,000 78,500,000 2.94 ——
13 34,000,000 34,500,000 2.88 SVIL、ZNF438
13 40,000,000 40,500,000 2.67 KIZ
21 28,750,000 29,250,000 2.66 SNRPA1、TARS3、TM2D3
14 30,750,000 31,250,000 2.60 ARFGEF1、COPS5、CSPP1、PPP1R42、SGK3
1 113,500,000 114,000,000 2.20 GMPS
8 66,500,000 67,000,000 2.14 ALG2、COL15A1、SEC61B、TGFBR1
27 1,000,000 1,500,000 2.10 CLN8、MIR10169、MYOM2
6 78,250,000 78,750,000 2.08 ——
19 59,750,000 60,250,000 2.06 SLC39A11、SSTR2
14 58,500,000 59,000,000 2.03 ——
Health-related and Reproduction-related 2 134,250,000 134,750,000 2.37 CNR2、FUCA1、IFNLR1、IL22RA1、PNRC2、SRSF10
26 2,750,000 3,250,000 2.29 ——
16 39,250,000 39,750,000 2.24 EXOSC10、MASP2、SRM、TARDBP
23 28,000,000 28,500,000 2.18 MIR12033、OR12D2、UBD
1 147,000,000 147,500,000 2.15 CFAP410、FAM207A、ITGB2、KRTAP10-2、KRTAP10-8、KRTAP12-2、LOC617218、LOC780781、LRRC3、PFKL、PTTG1IP、SUMO3、TSPEAR、UBE2G2
23 19,000,000 19,500,000 2.02 SUPT3H