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Table 7 The gene-tissue pairs significantly associated with economically important traits from cGTEx (for iHS)

From: Genome-wide selection signatures detection in Shanghai Holstein cattle population identified genes related to adaption, health and reproduction traits

Traits Gene-tissue pairs
Milk yield C2CD2-Embryo、GSKIP-Muscle、SNX33-Embryo
Protein yield C2CD2-Embryo、GSKIP-Muscle、SNX33-Embryo、KIRREL3-Adipose、HES6-Intramuscular_fat
Protein percentage C2CD2-Embryo、GTF3A-Embryo
Fat yield C2CD2-Embryo、KIRREL3-Adipose
Mastitis ETFA-Liver、ATP8A2-Liver、CIDEB-Blood、LTB4R-Blood、PTPN9-Muscle、MAN2C1-Blood、USP12-Intramuscular_fat
Sire conception rate TRIM27-Macrophage、GSKIP-Muscle、RNF31-Milk_cell、ADCY4-Ileum、ATG2B-Liver、SDR39U1-Intramuscular_fat
Sire calving ease RGS9-Blood、ARSG-Blood
Heifer conception rate RPUSD4-Adipose
Age at first calving CHMP4A-Blood、DCAF11-Blood、HP1BP3-Lymph_node、WIPI1-Jejunum
Days to first breeding after calving GTF3A-Embryo、MGC134105-Liver
Daughter stillbirth FLT1-Macrophage、RGS9-Blood、TCP1-Blood
Cow conception rate EXOC4-Blood、MGC134105-Liver
Daughter pregnancy rate TRIM27-Macrophage、EXOC4-Blood、CHMP4A-Blood、MGC134105-Liver、CAMK2N1-Blood
Daughter calving ease PRKAR1A-Blood、RGS9-Blood、CBLN3-Adipose、KCNMB1-Blood
Under depth ETFA-Liver、FLT1-Macrophage
Udder cleft ETFA-Liver、TRIM27-Macrophage、FLT1-Macrophage
Teat length PTPN9-Muscle
Strength GTF3A-Embryo、FLT1-Macrophage、KIRREL3-Adipose、PRKAR1A-Blood
Stature GTF3A-Embryo
Rump width KIRREL3-Adipose、ST3GAL4-Blood、ARSG-Blood、FOXRED1-Blood
Rump angle GTF3A-Embryo、GSKIP-Muscle
Retained placenta C2CD2-Embryo、CHMP4A-Blood、MDP1-Blood、TMPRSS2-Mammary
Rear udder height ETFA-Liver、TRIM27-Macrophage、PAPOLA-Monocytes
Rear teat placemen ETFA-Liver、KHNYN-Intramuscular_fat、PKM-Macrophage
Rear legs rear view SRPRA-Blood、ALPL-Blood
Net merit C2CD2-Embryo、TRIM27-Macrophage
Metritis EXOC4-Blood、CIDEB-Blood、LTB4R-Blood、ABCC6-Liver
Ketosis FLT1-Macrophage、ATP8A2-Liver、LTB4R-Blood、DCAF11-Blood、RNF31-Milk_cell、FITM1-Blood、MRPL18-Blood
Hypocalcemia ATP8A2-Liver
Front teat placement ETFA-Liver、CIDEB-Blood
Fore udder attachment ETFA-Liver、GSKIP-Muscle、ST3GAL4-Blood、DCPS-Liver
Feet and legs SRPRA-Blood
Displaced abomasum ATP8A2-Liver、EXOC4-Blood、HP1BP3-Lymph_node
Dairy form TRIM27-Macrophage、ACAT2-Liver
Body depth KIRREL3-Adipose、PRKAR1A-Blood
Foot angle GTF3A-Embryo、SRPRA-Blood
Overall conformation score ETFA-Liver、SRPRA-Blood、ST3GAL4-Blood