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Table 2 Candidate genes identified by integrated haplotype score (iHS) test under the evidence of signature of selection in the Brazilian Mangalarga Marchador horses

From: Genome-wide scans for signatures of selection in Mangalarga Marchador horses using high-throughput SNP genotyping

Ensembl Gene ID Chr Start Position End Position Genes Description
ENSECAG00000008623 1 149,907,955 150,022,286 SPRED1 sprouty related EVH1 domain containing 1
ENSECAG00000010114 1 149,706,774 149,775,059 RASGRP1 RAS guanyl releasing protein 1
ENSECAG00000005510 2 28,397,066 28,398,058 GPR3 G protein-coupled receptor 3
ENSECAG00000010268 2 28,323,886 28,385,023 WASF2 WAS protein family member 2
ENSECAG00000011296 2 28,562,401 28,609,929 SLC9A1 solute carrier family 9 member A1
ENSECAG00000014444 2 28,406,073 28,409,277 CD164L2 CD164 molecule like 2
ENSECAG00000014857 2 28,412,906 28,416,935 FCN3 ficolin 3
ENSECAG00000015410 2 28,420,416 28,429,784 MAP3K6 mitogen-activated protein kinase kinase kinase 6
ENSECAG00000020672 2 28,430,246 28,438,417 SYTL1 synaptotagmin like 1
ENSECAG00000023706 2 28,443,577 28,453,634 TMEM222 transmembrane protein 222
ENSECAG00000024411 2 28,463,993 28,508,594 WDTC1 WD and tetratricopeptide repeats 1
ENSECAG00000009649 3 7,693,420 7,744,860 LPCAT2 lysophosphatidylcholine acyltransferase 2
ENSECAG00000011520 3 7,794,621 7,835,751 SLC6A2 solute carrier family 6 member 2
ENSECAG00000009281 4 13,120,953 13,294,999 GLI3 GLI family zinc finger 3
ENSECAG00000007481 5 12,015,652 12,304,265 ASTN1 astrotactin 1
ENSECAG00000024570 5 12,310,453 12,412,709 BRINP2 BMP/retinoic acid inducible neural specific 2
ENSECAG00000025428 5 12,172,407 12,172,489   eca-mir-488
ENSECAG00000000386 6 34,369,455 34,374,801 LRRC23 leucine rich repeat containing 23
ENSECAG00000000465 6 34,410,281 34,420,057 PTPN6 protein tyrosine phosphatase, non-receptor type 6
ENSECAG00000000701 6 5,486,218 5,551,290 FN1 fibronectin 1
ENSECAG00000000726 6 70,865,117 70,867,507 HOXC9 homeobox C9
ENSECAG00000003682 6 70,892,992 70,894,488 HOXC6 homeobox C6
ENSECAG00000004151 6 70,897,601 70,899,132 HOXC5 homeobox C5
ENSECAG00000004202 6 70,917,898 70,919,290 HOXC4 homeobox C4
ENSECAG00000007386 6 34,377,361 34,383,187 ENO2 enolase 2
ENSECAG00000009049 6 34,274,460 34,301,295 CD4 CD4 molecule
ENSECAG00000009519 6 34,515,391 34,524,075 C1S complement C1s
ENSECAG00000012522 6 34,321,532 34,326,725 GNB3 G protein subunit beta 3
ENSECAG00000014517 6 34,328,207 34,330,205 CDCA3 cell division cycle associated 3
ENSECAG00000014532 6 34,331,414 34,344,976 USP5 ubiquitin specific peptidase 5
ENSECAG00000014653 6 5,446,142 5,472,875 ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
ENSECAG00000015581 6 34,346,419 34,349,728 TPI1 triosephosphate isomerase 1
ENSECAG00000016937 6 34,425,844 34,429,448 PHB2 prohibitin 2
ENSECAG00000019250 6 34,304,988 34,308,833 GPR162 G protein-coupled receptor 162
ENSECAG00000021403 6 34,393,931 34,400,776 ATN1 atrophin 1
ENSECAG00000021815 6 34,310,310 34,319,714 P3H3 prolyl 3-hydroxylase 3
ENSECAG00000022412 6 34,429,726 34,434,811 EMG1 EMG1, N1-specific pseudouridine methyltransferase
ENSECAG00000023202 6 34,435,377 34,471,395 LPCAT3 lysophosphatidylcholine acyltransferase 3
ENSECAG00000024867 6 70,802,998 70,809,716 HOXC13 homeobox C13
ENSECAG00000024869 6 34,402,198 34,404,001 C6H12orf57 chromosome 6 C12orf57 homolog
ENSECAG00000024893 6 70,819,239 70,820,860 HOXC12 homeobox C12
ENSECAG00000024900 6 70,837,383 70,840,203 HOXC11 homeobox C11
ENSECAG00000024985 6 70,850,147 70,854,018 HOXC10 homeobox C10
ENSECAG00000025389 6 34,423,082 34,423,146   eca-mir-200c
ENSECAG00000025607 6 70,898,503 70,898,599   eca-mir-615
ENSECAG00000026310 6 34,423,490 34,423,561   eca-mir-141
ENSECAG00000027042 6 34,402,169 34,402,230   U7 small nuclear RNA
ENSECAG00000027594 6 34,426,452 34,426,715   small nucleolar RNA U89
ENSECAG00000003757 10 6,624,595 6,634,234 GAPDHS glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
ENSECAG00000005226 10 6,561,153 6,562,124 FFAR2 free fatty acid receptor 2
ENSECAG00000011198 10 60,335,470 60,340,309 AMD1 adenosylmethionine decarboxylase 1
ENSECAG00000011975 10 6,634,647 6,636,230 TMEM147 transmembrane protein 147
ENSECAG00000012822 10 9,635,035 9,645,344 EIF3K eukaryotic translation initiation factor 3 subunit K
ENSECAG00000013121 10 6,639,494 6,652,250 ATP4A ATPase H+/K+ transporting subunit alpha
ENSECAG00000014214 10 60,375,200 60,382,281 GTF3C6 general transcription factor IIIC subunit 6
ENSECAG00000015344 10 9,510,873 9,616,030 RYR1 ryanodine receptor 1
ENSECAG00000017061 10 9,616,257 9,633,779 MAP4K1 mitogen-activated protein kinase kinase kinase kinase 1
ENSECAG00000017121 10 60,395,300 60,425,982 RPF2 ribosome production factor 2 homolog
ENSECAG00000020313 10 60,557,764 60,601,940 SLC16A10 solute carrier family 16 member 10
ENSECAG00000021777 10 9,692,742 9,718,476 ACTN4 actinin alpha 4
ENSECAG00000025001 10 6,589,049 6,591,925 KRTDAP keratinocyte differentiation associated protein
ENSECAG00000006771 11 13,417,359 13,812,648 PRKCA protein kinase C alpha
ENSECAG00000007214 11 13,765,651 14,005,312 CACNG4 calcium voltage-gated channel auxiliary subunit gamma 4
ENSECAG00000000176 13 1,935,848 1,947,933 ZDHHC4 zinc finger DHHC-type containing 4
ENSECAG00000008056 13 2,414,177 2,422,727 FSCN1 fascin actin-bundling protein 1
ENSECAG00000009724 13 2,153,427 2,160,374 RBAK RB associated KRAB zinc finger
ENSECAG00000010225 13 1,882,012 1,913,837 GRID2IP Grid2 interacting protein
ENSECAG00000011713 13 1,949,573 1,958,047 C7orf26 chromosome 7 open reading frame 26
ENSECAG00000013171 13 2,265,413 2,398,956 RNF216 ring finger protein 216
ENSECAG00000015935 13 2,463,585 2,465,463 ACTB Equus caballus actin beta (ACTB), mRNA
ENSECAG00000016420 13 2,086,916 2,092,792 ZNF12 zinc finger protein 12
ENSECAG00000018678 13 2,472,540 2,510,292 FBXL18 F-box and leucine rich repeat protein 18
ENSECAG00000022114 13 2,711,477 2,738,292 WIPI2 WD repeat domain, phosphoinositide interacting 2
ENSECAG00000013897 16 65,160,454 65,270,909 RFTN1 raftlin, lipid raft linker 1
ENSECAG00000008768 18 79,106,315 80,034,010 PARD3B par-3 family cell polarity regulator beta
ENSECAG00000012151 18 12,086,034 12,116,622 MARCO macrophage receptor with collagenous structure
ENSECAG00000016824 18 80,076,435 80,186,347 NRP2 neuropilin 2
ENSECAG00000018298 18 76,437,419 76,456,956 STRADB STE20-related kinase adaptor beta
ENSECAG00000019645 18 76,634,162 76,650,235 TMEM237 transmembrane protein 237
ENSECAG00000022800 18 76,653,422 76,689,588 MPP4 membrane palmitoylated protein 4
ENSECAG00000010916 20 50,162,197 50,233,536 TRAM2 translocation associated membrane protein 2
ENSECAG00000015579 20 50,310,519 50,323,621 TMEM14A transmembrane protein 14A
ENSECAG00000016221 20 50,347,190 50,357,534 GSTA1 Equus caballus glutathione S-transferase alpha 1 (GSTA1), mRNA
ENSECAG00000019567 20 50,425,513 50,435,370 LOC100271875 glutathionine S-transferase alpha 3
ENSECAG00000004463 23 50,231,564 50,255,138 UBAP1 ubiquitin associated protein 1
ENSECAG00000004776 23 50,338,512 50,340,656 MYORG myogenesis regulating glycosidase (putative)
ENSECAG00000004839 23 50,465,243 50,465,473 ENHO Equus caballus energy homeostasis associated (ENHO), mRNA
ENSECAG00000006176 23 50,484,877 50,502,709 CNTFR ciliary neurotrophic factor receptor
ENSECAG00000010758 23 50,257,759 50,299,304 KIF24 kinesin family member 24
ENSECAG00000011552 23 50,328,495 50,331,173 NUDT2 nudix hydrolase 2
ENSECAG00000011566 23 50,345,688 50,359,034 C9orf24 chromosome 9 open reading frame 24
ENSECAG00000012578 23 50,362,111 50,367,137 FAM219A family with sequence similarity 219 member A
ENSECAG00000016961 23 50,426,532 50,464,571 DNAI1 dynein axonemal intermediate chain 1
ENSECAG00000027205 23 50,423,793 50,424,056   RNA, 7SK small nuclear pseudogene 24
ENSECAG00000002357 23 50,540,041 50,540,532 RPP25L ribonuclease P/MRP subunit p25 like
ENSECAG00000013178 23 50,543,087 50,549,476 DCTN3 dynactin subunit 3
ENSECAG00000019783 23 50,562,602 50,564,385 SIGMAR1 sigma non-opioid intracellular receptor 1
ENSECAG00000001054 25 27,004,948 27,005,868 LOC100071212 olfactory receptor 1 L6-like
ENSECAG00000001330 25 27,025,906 27,026,868 OR5C1 olfactory receptor 5C1
ENSECAG00000002169 25 27,033,670 27,034,620 OR1K1 olfactory receptor family 1 subfamily K member 1
ENSECAG00000002222 25 27,136,728 27,138,002 ZBTB6 zinc finger and BTB domain containing 6
ENSECAG00000006897 25 26,957,307 26,958,330 LOC100071227 olfactory receptor 1 L4-like
ENSECAG00000006946 25 26,979,321 26,980,244 LOC100071218 olfactory receptor 1 L4-like
ENSECAG00000017397 25 27,143,414 27,153,522 ZBTB26 zinc finger and BTB domain containing 26
ENSECAG00000017729 25 27,161,291 27,312,547 RABGAP1 RAB GTPase activating protein 1
ENSECAG00000021253 25 26,896,324 27,056,065 PDCL phosducin like
ENSECAG00000022176 25 27,085,189 27,132,323 RC3H2 ring finger and CCCH-type domains 2
ENSECAG00000025393 25 27,106,545 27,106,655   small nucleolar RNA SNORD90
ENSECAG00000007192 30 26,241,146 26,299,185 PTPRC protein tyrosine phosphatase, receptor type C
ENSECAG00000023881 30 26,077,245 26,096,063 ATP6V1G3 ATPase H+ transporting V1 subunit G3
ENSECAG00000025552 30 26,398,918 26,399,027   eca-mir-181a-2
  1. Chr: Chromosomes