Table 3 Candidate genes identified by runs of homozygosity (ROH) test under evidence of positive signature of selection in the Brazilian Mangalarga Marchador horses

ENSECAG00000010114

1

149,706,774

149,775,059

RASGRP1

RAS guanyl releasing protein 1

ENSECAG00000003634

6

30,832,832

30,834,614

RHNO1

RAD9-HUS1-RAD1 interacting nuclear orphan 1

ENSECAG00000005303

6

30,883,302

30,896,118

TULP3

tubby like protein 3

ENSECAG00000009337

6

31,002,891

31,197,638

TSPAN9

tetraspanin 9

ENSECAG00000010144

6

30,609,983

30,638,725

DDX11

DEAD/H-box helicase 11

ENSECAG00000010693

6

30,781,746

30,790,420

ITFG2

integrin alpha FG-GAP repeat containing 2

ENSECAG00000011303

6

30,931,802

30,968,566

TEAD4

TEA domain transcription factor 4

ENSECAG00000013410

6

30,360,399

30,398,526

SLC6A13

solute carrier family 6 member 13

ENSECAG00000018082

6

30,792,657

30,799,176

NRIP2

nuclear receptor interacting protein 2

ENSECAG00000018777

6

30,810,694

30,816,253

TEX52

testis expressed 52

ENSECAG00000019129

6

30,817,902

30,826,537

FOXM1

forkhead box M1

ENSECAG00000019283

6

30,595,381

30,608,852

WASHC1

WASH complex subunit 1

ENSECAG00000020465

6

30,769,282

30,775,457

FKBP4

FK506 binding protein 4

ENSECAG00000005017

7

45,641,390

45,646,041

FBXW9

F-box and WD repeat domain containing 9

ENSECAG00000008886

7

45,647,009

45,647,307

GNG14

G protein subunit gamma 14

ENSECAG00000009177

7

45,651,702

45,655,097

DHPS

deoxyhypusine synthase

ENSECAG00000012154

7

45,617,437

45,620,601

TRIR

telomerase RNA component interacting RNase

ENSECAG00000013673

7

45,626,599

45,637,845

TNPO2

transportin 2

ENSECAG00000019788

7

45,655,144

45,658,885

WDR83

WD repeat domain 83

ENSECAG00000021981

7

45,659,262

45,660,408

WDR83OS

WD repeat domain 83 opposite strand

ENSECAG00000003551

9

73,341,857

73,423,501

LRRC6

leucine rich repeat containing 6

ENSECAG00000012611

9

73,453,208

73,478,427

TMEM71

transmembrane protein 71

ENSECAG00000017467

9

72,950,611

72,999,460

KCNQ3

potassium voltage-gated channel subfamily Q member 3

ENSECAG00000002945

11

32,087,533

32,087,985

CCDC182

coiled-coil domain containing 182

ENSECAG00000011435

11

31,647,130

32,031,445

MSI2

musashi RNA binding protein 2

ENSECAG00000002212

17

18,615,804

18,617,704

FOXO1

forkhead box O1

ENSECAG00000003600

17

18,742,806

18,778,545

MRPS31

mitochondrial ribosomal protein S31

ENSECAG00000002357

23

50,540,041

50,540,532

RPP25L

ribonuclease P/MRP subunit p25 like

ENSECAG00000004839

23

50,465,243

50,465,473

ENHO

Equus caballus energy homeostasis associated (ENHO), mRNA

ENSECAG00000006176

23

50,484,877

50,502,709

CNTFR

ciliary neurotrophic factor receptor

ENSECAG00000008176

23

50,568,433

50,571,634

GALT

galactose-1-phosphate uridylyltransferase

ENSECAG00000011566

23

50,345,688

50,359,034

C9orf24

chromosome 9 open reading frame 24

ENSECAG00000012578

23

50,362,111

50,367,137

FAM219A

family with sequence similarity 219 member A

ENSECAG00000013178

23

50,543,087

50,549,476

DCTN3

dynactin subunit 3

ENSECAG00000013412

23

50,605,846

50,607,075

CCL19

C-C motif chemokine ligand 19

ENSECAG00000016961

23

50,426,532

50,464,571

DNAI1

dynein axonemal intermediate chain 1

ENSECAG00000017442

23

50,576,370

50,582,294

IL11RA

interleukin 11 receptor subunit alpha

ENSECAG00000019783

23

50,562,602

50,564,385

SIGMAR1

sigma non-opioid intracellular receptor 1