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Table 2 GO enrichment analysis of DMRs

From: Genome-wide DNA methylation profile changes associated with shell colouration in the Yesso scallop (Patinopecten yessoensis) as measured by whole-genome bisulfite sequencing

iD Term ListHits FDR
(<  0.05)
iD Term ListHits FDR
(< 0.05)
Histone modification Chromosome and DNA structures
GO:0033129 positive regulation of histone phosphorylation 4 0.00E+ 00 GO:0006338 chromatin remodeling 28 1.75E-03
GO:0033169 histone H3-K9 demethylation 4 0.00E+ 00 GO:0035562 negative regulation of chromatin binding 4 3.12E-02
GO:0032454 histone demethylase activity (H3-K9 specific) 4 0.00E+ 00 GO:0051304 chromosome separation 4 3.12E-02
GO:0044020 histone methyltransferase activity (H4-R3 specific) 4 0.00E+ 00 GO:0043138 3′-5′ DNA helicase activity 5 0.00E+ 00
GO:0035267 NuA4 histone acetyltransferase complex 15 1.46E-04 GO:0004003 ATP-dependent DNA helicase activity 16 8.62E-04
GO:0018024 histone-lysine N-methyltransferase activity 15 1.46E-04 GO:0032508 DNA duplex unwinding 21 2.79E-03
GO:0043968 histone H2A acetylation 12 3.02E-04 GO:0003678 DNA helicase activity 10 1.54E-02
GO:0000123 histone acetyltransferase complex 15 5.57E-04 GO:0043141 ATP-dependent 5′-3′ DNA helicase activity 8 2.16E-02
GO:0071044 histone mRNA catabolic process 7 2.67E-03 Transcription regulation
GO:0042800 histone methyltransferase activity (H3-K4 specific) 7 2.67E-03 GO:0008023 transcription elongation factor complex 11 0.00E+ 00
GO:0000118 histone deacetylase complex 14 3.16E-03 GO:0033276 transcription factor TFTC complex 7 0.00E+ 00
GO:0051571 positive regulation of histone H3-K4 methylation 6 6.17E-03 GO:0005669 transcription factor TFIID complex 16 2.73E-04
GO:0016575 histone deacetylation 11 8.28E-03 GO:0017053 transcriptional repressor complex 16 8.62E-04
GO:0042826 histone deacetylase binding 28 1.27E-02 GO:0010608 posttranscriptional regulation of gene expression 12 1.36E-03
GO:0070776 MOZ/MORF histone acetyltransferase complex 5 1.41E-02 GO:0006351 transcription, DNA-templated 28 1.75E-03
GO:0017136 NAD-dependent histone deacetylase activity 5 1.41E-02 GO:0000127 transcription factor TFIIIC complex 6 6.17E-03
GO:0043966 histone H3 acetylation 15 1.74E-02 GO:0000976 transcription regulatory region sequence-specific DNA binding 16 1.05E-02
GO:0043967 histone H4 acetylation 11 1.94E-02 GO:0005675 transcription factor TFIIH holo complex 6 2.86E-02
GO:0043981 histone H4-K5 acetylation 8 2.16E-02 Pigmentation
GO:0043982 histone H4-K8 acetylation 8 2.16E-02 GO:0043473 pigmentation 8 6.70E-03
GO:0031065 positive regulation of histone deacetylation 6 2.86E-02 GO:0030318 melanocyte differentiation 7 2.67E-03
GO:0035067 negative regulation of histone acetylation 6 2.86E-02 GO:0032438 melanosome organization 7 0.00E+ 00
GO:0051568 histone H3-K4 methylation 6 2.86E-02 GO:0032402 melanosome transport 6 6.17E-03
GO:0016570 histone modification 4 3.12E-02 GO:0035646 endosome to melanosome transport 7 1.41E-02
GO:0004402 histone acetyltransferase activity 16 3.19E-02 GO:0006779 porphyrin-containing compound biosynthetic process 4 0.00E+ 00
GO:0035064 methylated histone binding 22 3.73E-02 GO:0006783 heme biosynthetic process 12 1.36E-03
GO:0070932 histone H3 deacetylation 7 4.01E-02     
GO:0016573 histone acetylation 12 4.21E-02