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Table 3 DMRs involved in genes associated with shell colouration

From: Genome-wide DNA methylation profile changes associated with shell colouration in the Yesso scallop (Patinopecten yessoensis) as measured by whole-genome bisulfite sequencing

Gene Name Accession ID Scaffold ID Position Start Position End Methylation level-Brown (%) Methylation level-White (%) Methylation Difference (%) P value (≤0.05)
ALAS LOC110452629 NW_018406720.1 745,001 746,000 80 67.57 12.43 1.98E-02
ALAD LOC110458627 NW_018408167.1 103,001 104,000 22.75 34.55 −11.81 2.04E-03
UROS LOC110449792 NW_018405737.1 1,396,001 1,397,000 15.47 0.24 15.23 4.54E-55
1,397,001 1,398,000 19.29 0.76 18.53 1.39E-50
1,398,001 1,399,000 31.86 1.93 29.93 6.29E-79
1,399,001 1,400,000 76.19 56.57 19.63 1.79E-22
1,400,001 1,401,000 62.85 39.42 23.44 5.99E-21
1,401,001 1,402,000 54.34 40.18 14.16 1.63E-06
1,426,001 1,427,000 56.66 42.68 13.98 7.03E-05
1,430,001 1,431,000 73.93 59.91 14.02 6.10E-05
UROD LOC110452530 NW_018406690.1 1,375,001 1,376,000 58.46 74.66 −16.2 1.43E-02
1,378,001 1,379,000 70.97 59.82 11.15 4.75E-02
CPOX LOC110453297 NW_018406955.1 618,001 619,000 66.39 78.23 −11.84 2.89E-04
PPOX LOC110452239 NW_018406583.1 28,001 29,000 71.48 0 71.48 5.79E-07
31,001 32,000 76.35 64.29 12.07 1.01E-02
FECH LOC110449109 NW_018405575.1 179,001 180,000 71.13 89.35 −18.22 3.47E-05
183,001 184,000 27.14 13.14 14 4.77E-07
MITF LOC110457295 NW_018407865.1 121,001 122,000 30.3 60.87 −30.57 3.02E-02
129,001 130,000 33.98 51 −17.02 9.05E-17
138,001 139,000 38.88 49.16 −10.28 7.10E-03