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Table 4 General statistics from all contigs retrieved in the assembly approaches

From: Benchmarking different approaches for Norovirus genome assembly in metagenome samples

  Mean total number of contigs Mean number of contigs >5 kb Mean number of contigs >10Kb Mean total length of contigs > 5 kb Mean total length of contigs > 10 kb Mean largest contig Mean N50 value length
Human filter MEGAHIT (pA) 6851 16 1 114,901 25,288 20,422 1057
NoV filter MEGAHIT (pB) 734 3 0 18,951 0 7753 1257
Raw MEGAHIT (pC) 8142 18 1 132,123 28,435 20,662 1001
MEGAHIT + CD-HIT (pD) 6402 15 1 115,282 27,543 19,538 1018
Human filter SPAdes (pA) 11,250 3 0 25,351 6508 10,274 890
NoV filter SPAdes (pB) 1404 1 0 7335 0 6681 1146
Raw SPAdes (pC) 13,175 4 1 31,236 9095 9558 852
SPAdes + CD-HIT (pD) 11,948 13 1 89,159 13,571 13,530 928
  1. pipelines A, B, C or D respectively