Table 4 General statistics from all contigs retrieved in the assembly approaches
From: Benchmarking different approaches for Norovirus genome assembly in metagenome samples
Mean total number of contigs | Mean number of contigs >5 kb | Mean number of contigs >10Kb | Mean total length of contigs > 5 kb | Mean total length of contigs > 10 kb | Mean largest contig | Mean N50 value length | |
|---|---|---|---|---|---|---|---|
Human filter MEGAHIT (pA) | 6851 | 16 | 1 | 114,901 | 25,288 | 20,422 | 1057 |
NoV filter MEGAHIT (pB) | 734 | 3 | 0 | 18,951 | 0 | 7753 | 1257 |
Raw MEGAHIT (pC) | 8142 | 18 | 1 | 132,123 | 28,435 | 20,662 | 1001 |
MEGAHIT + CD-HIT (pD) | 6402 | 15 | 1 | 115,282 | 27,543 | 19,538 | 1018 |
Human filter SPAdes (pA) | 11,250 | 3 | 0 | 25,351 | 6508 | 10,274 | 890 |
NoV filter SPAdes (pB) | 1404 | 1 | 0 | 7335 | 0 | 6681 | 1146 |
Raw SPAdes (pC) | 13,175 | 4 | 1 | 31,236 | 9095 | 9558 | 852 |
SPAdes + CD-HIT (pD) | 11,948 | 13 | 1 | 89,159 | 13,571 | 13,530 | 928 |