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Table 5 General statistics from all contigs assigned to Norovirus using BLAST algorithm

From: Benchmarking different approaches for Norovirus genome assembly in metagenome samples

  Mean total number of contigs Mean number of contigs >5 kb Mean number of contigs >10Kb Mean total length of contigs > 5 kb Mean total length of contigs > 10 kb Mean largest contig Mean N50 value length
Human filter MEGAHIT (pA) 27 1 0 9282 0 7638 4567
NoV filter MEGAHIT (pB) 14 1 0 9527 0 7286 4953
Raw MEGAHIT (pC) 18 2 0 10,153 0 7501 4555
MEGAHIT + CD-HIT (pD) 34 1 0 10,700 1635 8293 5010
Human filter SPAdes (pA) 138 1 0 6099 0 6556 3632
NoV filter SPAdes (pB) 131 1 0 7335 0 6681 3861
Raw SPAdes (pC) 138 1 0 7954 0 6623 3733
SPAdes + CD-HIT (pD) 16 1 0 7273 0 6332 3682
  1. . pA, pB, pC and pD: pipelines A, B, C or D respectively