Table 5 General statistics from all contigs assigned to Norovirus using BLAST algorithm
From: Benchmarking different approaches for Norovirus genome assembly in metagenome samples
Mean total number of contigs | Mean number of contigs >5 kb | Mean number of contigs >10Kb | Mean total length of contigs > 5 kb | Mean total length of contigs > 10 kb | Mean largest contig | Mean N50 value length | |
|---|---|---|---|---|---|---|---|
Human filter MEGAHIT (pA) | 27 | 1 | 0 | 9282 | 0 | 7638 | 4567 |
NoV filter MEGAHIT (pB) | 14 | 1 | 0 | 9527 | 0 | 7286 | 4953 |
Raw MEGAHIT (pC) | 18 | 2 | 0 | 10,153 | 0 | 7501 | 4555 |
MEGAHIT + CD-HIT (pD) | 34 | 1 | 0 | 10,700 | 1635 | 8293 | 5010 |
Human filter SPAdes (pA) | 138 | 1 | 0 | 6099 | 0 | 6556 | 3632 |
NoV filter SPAdes (pB) | 131 | 1 | 0 | 7335 | 0 | 6681 | 3861 |
Raw SPAdes (pC) | 138 | 1 | 0 | 7954 | 0 | 6623 | 3733 |
SPAdes + CD-HIT (pD) | 16 | 1 | 0 | 7273 | 0 | 6332 | 3682 |