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Fig. 6 | BMC Genomics

Fig. 6

From: Application of the 3′ mRNA-Seq using unique molecular identifiers in highly degraded RNA derived from formalin-fixed, paraffin-embedded tissue

Fig. 6

Data comparison between the QuantSeq 3′ mRNA-Seq and RNA Exome Capture. A; Correlation analysis. Data were normalized by log2 (TPM + 1). Each dot constitutes a gene. B; Distribution of mapped reads. Data are means of EF1-FFPE-30 and GT1-FFPE-30 samples from each kit ± SD.***, p < 0.001; **, p < 0.01. The incompatible paired-end reads (11%) were not reflected in the RNA Exome Capture data. C; Number of detected protein-coding genes between two platforms. EF1-FFPE-30, 30% of DV200; GT1-FFPE-30, 30% of DV200

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BMC Genomics

ISSN: 1471-2164

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