Table 1 The 23 datasets from mouse piRBase included for generation of the piRNA-IPdb
From: piRNA-IPdb: a PIWI-bound piRNAs database to mining NGS sncRNA data and beyond
piRBase ID | Sequences | Total reads | Purification method | Tissue | PubMed ID | Accession | Series |
|---|---|---|---|---|---|---|---|
5 | 3,482 | No data | MILI IP | Testis | 16,751,777 | N/A | N/A |
11 | 568,759 | 9,881,322 | Miwi IP | Testes, C57BL/6 Adult Miwi +/+ | 22,121,019 | GSM822760 | GSE32184 |
12 | 720,903 | 8,723,133 | Miwi IP | Testes, C57BL/6 P14 Miwi +/+ | 22,121,019 | GSM822758 | GSE32184 |
13 | 575,786 | 8,660,950 | Miwi IP | Testes, C57BL/6 P20 Miwi +/+ | 22,121,019 | GSM822759 | GSE32184 |
31 | 1,068,849 | 7,028,316 | Miwi CLIP | C57BL/6 adult testis | 22,842,725 | GSM684624 | GSE27622 |
32 | 464,287 | 2,599,913 | Miwi CLIP | C57BL/6 adult testis | 22,842,725 | GSM684625 | GSE27622 |
33 | 118,015 | 625,561 | Miwi CLIP | C57BL/6 adult testis | 22,842,725 | GSM684626 | GSE27622 |
34 | 129,214 | 841,641 | Miwi CLIP | C57BL/6 adult testis | 22,842,725 | GSM684627 | GSE27622 |
35 | 249,590 | 4,978,836 | Mili CLIP | C57BL/6 adult testis | 22,842,725 | GSM684620 | GSE27622 |
36 | 187,442 | 5,177,881 | Mili CLIP | C57BL/6 adult testis | 22,842,725 | GSM684621 | GSE27622 |
37 | 167,997 | 3,670,855 | Mili CLIP | C57BL/6 adult testis | 22,842,725 | GSM684622 | GSE27622 |
38 | 194,293 | 3,487,124 | Mili CLIP | C57BL/6 adult testis | 22,842,725 | GSM684623 | GSE27622 |
60 | 334,652 | 471,657 | Mili IP | 16.5 dpc testis | 18,922,463 | GSM319956 | GSE12757 |
61 | 1,086,617 | 1,940,312 | Miwi2 IP | 16.5 dpc testis | 18,922,463 | GSM319957 | GSE12757 |
72 | 136,417 | 180,769 | Mili IP | 10 dpp testis | 17,446,352 | GSM179088 | GSE7414 |
81 | 2,880,834 | 5,974,682 | Mili IP | wild_type_1 E16.5 fetal testis | 22,020,280 | N/A | E-MTAB-730 |
82 | 3,229,065 | 7,409,965 | Mili IP | wild_type_2 E16.5 fetal testis | 22,020,280 | N/A | E-MTAB-730 |
87 | 1,883,101 | 5,442,465 | Miwi2 IP | wild_type_1 E16.5 fetal testis | 22,020,280 | N/A | E-MTAB-730 |
88 | 1,795,983 | 4,526,095 | Miwi2 IP | wild_type_2 E16.5 fetal testis | 22,020,280 | N/A | E-MTAB-730 |
132 | 1,815,424 | 6,909,670 | Miwi IP | adult testis | 20,022,248 | GSM475279 | GSE19172 |
133 | 2,625,847 | 9,616,083 | Mili IP | adult testis | 20,022,248 | GSM475280 | GSE19172 |
134 | 879 | No data | Miwi CLIP | elongating spermatids | 24,787,618 | N/A | N/A |
217 | 3,517,319 | 17,503,453 | MIWI CLIP | round spermatids | 25,582,079 | GSM1653802 | GSE67683 |