Skip to main content

Table 1 The 23 datasets from mouse piRBase included for generation of the piRNA-IPdb

From: piRNA-IPdb: a PIWI-bound piRNAs database to mining NGS sncRNA data and beyond

piRBase ID Sequences Total reads Purification method Tissue PubMed ID Accession Series
5 3,482 No data MILI IP Testis 16,751,777 N/A N/A
11 568,759 9,881,322 Miwi IP Testes, C57BL/6 Adult Miwi +/+ 22,121,019 GSM822760 GSE32184
12 720,903 8,723,133 Miwi IP Testes, C57BL/6 P14 Miwi +/+ 22,121,019 GSM822758 GSE32184
13 575,786 8,660,950 Miwi IP Testes, C57BL/6 P20 Miwi +/+ 22,121,019 GSM822759 GSE32184
31 1,068,849 7,028,316 Miwi CLIP C57BL/6 adult testis 22,842,725 GSM684624 GSE27622
32 464,287 2,599,913 Miwi CLIP C57BL/6 adult testis 22,842,725 GSM684625 GSE27622
33 118,015 625,561 Miwi CLIP C57BL/6 adult testis 22,842,725 GSM684626 GSE27622
34 129,214 841,641 Miwi CLIP C57BL/6 adult testis 22,842,725 GSM684627 GSE27622
35 249,590 4,978,836 Mili CLIP C57BL/6 adult testis 22,842,725 GSM684620 GSE27622
36 187,442 5,177,881 Mili CLIP C57BL/6 adult testis 22,842,725 GSM684621 GSE27622
37 167,997 3,670,855 Mili CLIP C57BL/6 adult testis 22,842,725 GSM684622 GSE27622
38 194,293 3,487,124 Mili CLIP C57BL/6 adult testis 22,842,725 GSM684623 GSE27622
60 334,652 471,657 Mili IP 16.5 dpc testis 18,922,463 GSM319956 GSE12757
61 1,086,617 1,940,312 Miwi2 IP 16.5 dpc testis 18,922,463 GSM319957 GSE12757
72 136,417 180,769 Mili IP 10 dpp testis 17,446,352 GSM179088 GSE7414
81 2,880,834 5,974,682 Mili IP wild_type_1 E16.5 fetal testis 22,020,280 N/A E-MTAB-730
82 3,229,065 7,409,965 Mili IP wild_type_2 E16.5 fetal testis 22,020,280 N/A E-MTAB-730
87 1,883,101 5,442,465 Miwi2 IP wild_type_1 E16.5 fetal testis 22,020,280 N/A E-MTAB-730
88 1,795,983 4,526,095 Miwi2 IP wild_type_2 E16.5 fetal testis 22,020,280 N/A E-MTAB-730
132 1,815,424 6,909,670 Miwi IP adult testis 20,022,248 GSM475279 GSE19172
133 2,625,847 9,616,083 Mili IP adult testis 20,022,248 GSM475280 GSE19172
134 879 No data Miwi CLIP elongating spermatids 24,787,618 N/A N/A
217 3,517,319 17,503,453 MIWI CLIP round spermatids 25,582,079 GSM1653802 GSE67683