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Table 3 Summary of prediction of secretome and pathogenicity related factors in Claviceps paspali isolates

From: Genome-wide analysis of Claviceps paspali: insights into the secretome of the main species causing ergot disease in Paspalum spp

Category ILB388 ILB432 RRC-1481
Total proteins 8012 8243 8122
PSP (% of total proteome) 371 (4.6%) 409 (4.9%) 364 (4.5%)
PSP with BLAST results (% total PSP) 248 (66.8%) 269 (65.8%) 234 (64.3%)
PSP functional annotated (% total PSP) 121 (32.6%) 115 (28.1%) 117 (32.1%)
SSP 244 264 245
Total SCRP 123 127 113
Conserved effectors motifs 53 63 55
Total PHI-base 56 65 81
Total CAZymes 45 54 45
Total effector like proteins (% of total PSP) a 263 (71.1%) 292 (71.4%) 264 (72.5%)
Total predicted pathogenicity factors (% of total PSP) b 325 (87.6%) 353 (86.3%) 316 (86.8%)
Localization of predicted effectors
 Apoplast c 230 239 223
 Chloroplast d 13 14 21
 Mitochondria d 12 18 8
 Nucleus d 32 26 31
  1. a = Proteins with at least one condition defined for effector; b = Proteins with at least one condition defined for pathogenicity factor prediction; c = Predicted with ApoplastP; d = Predicted with Localizer. PSP = predicted candidate secreted protein. SSP = small secreted protein. SCRP = small cysteine-rich protein