Fig. 3

Phylogenetic placement of Phytophthora betacei P8084 and Phytophthora infestans RC1-10. A coalescent-based species phylogenetic tree was inferred using 2392 maximum-likelihood gene trees derived from single-copy orthologs shared among Phytophthora betacei P8084, P. infestans RC1-10, and other reference assemblies of the genus Phytophthora. The tree was rooted following the topology proposed by Yang et al. [2] and the clade nomenclature was taken from the same study. The scale is in coalescent units (CU), the numbers in the nodes indicate the local posterior probability of the branches, and the assembly size is indicated inside parentheses to the right of the name of the assembly