Table 1 Assembly statistics of Phytophthora betacei P8084 and Phytophthora infestans RC1-10 compared to Phytophthora RefSeq genomes
Assembly | P. betacei P8084 | P. infestans (RC1-10) | P. infestans RefSeq (T30-4) | P. sojae RefSeq (V3 P6497) | P. nicotianae (P1569) | P. ramorum RefSeq (Pr102) |
|---|---|---|---|---|---|---|
Contigs/Scaffolds | 802 | 2902 | 4921 | 82 | 5010 | 2576 |
Total length (Mb) | 270.89 | 203.29 | 228.54 | 82.60 | 55.10 | 66.65 |
Genome in contigs > = 50 Kb (%) | 98.29 | 76.90 | 89.88 | 99.12 | 27.90 | 72.63 |
Largest contig (Mb) | 4.15 | 0.88 | 6.93 | 13.39 | 0.30 | 1.24 |
GC (%) | 51.00 | 51.00 | 51.00 | 55.00 | 49.60 | 54.00 |
N50 (Kb) | 737.97 | 120.01 | 1588.62 | 7609.24 | 27.20 | 308.04 |
L50 | 103.00 | 413.00 | 38.00 | 4.00 | 549.00 | 63.00 |
N’s in the assembly (%) | 0.00 | 0.00 | 16.81 | 3.96 | 0.00 | 18.35 |