Table 3 Annotation statistics of transposable elements (TEs) of Phytophthora betacei P8084 and P. infestans RC1-10 and T30-4 assemblies
P. betacei P8084 | P. infestans RC1-10 | P. infestans T30-4 | |
|---|---|---|---|
Cumulative TE coverage (bp) | 128 165 366 | 141 368 243 | 102 711 821 |
Percentage of the genome covered by TE (%) | 47.31 | 68.85 | 44.20 |
Total number of TE fragments | 75 950 | 85 415 | 65 054 |
Total number of full-length fragments | 12 279 (16.17 %) | 11 954 (14.00 %) | 6314 (9.71 %) |
Total number of TE copies | 63 842 | 65 956 | 55 488 |
Total number of full-length copies | 13 245 (20.75 %) | 12 961 (19.65 %) | 6731 (12.13 %) |
Total number of simple repeats (SSRs) and low complexity regions | 27 325 | 18 019 | 17 172 |
Total combined cummulative coverage of simple repeats (SSRs) and low complexity regions (bp) | 1 089 595 | 744 317 | 764 909 |