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Fig. 4 | BMC Genomics

Fig. 4

From: Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium

Fig. 4

(A-C): Clinical application of prophage typing during an outbreak investigation. The concatenated prophage reference sequence is indicated as red-blue outer circle. In panel A, the first inner circle from the centre represents the sequence of an outbreak isolate (index patient) belonging to ST117/CT24. The second circle from the centre represents the sequence of an additional isolate which belongs to the same outbreak event and complex type. In panel B, next to the isolates indicated in panel A, isolates belonging to the same complex type, but not epidemiologically related to the same outbreak event are presented. In the last outer ring, the genes responsible for the differences between the isolates has been annotated. In panel C, sequences of additional isolates belonging to different sequence types than the outbreak event are depicted in different colours. The isolates in the legend should be read starting from top to down and from inner circle to outer circle

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