Table 1 Information on the UMCG isolates used in this study
From: Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium
ID | V1 | V2 | BL4 | BL5 | BL6 | B2 | B11 | A7 | BL1 | BL2 | BL3 | S1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
ST | 80 | 80 | 80 | 80 | 80 | 117 | 117 | 117 | 117 | 117 | 117 | 117 |
CT | 16 | 16 | 16 | 16 | 16 | 24 | 24 | 24 | 24 | 24 | 24 | 24 |
Vancomycin Resistance | VRE | VRE | VSE | VSE | VSE | VRE | VRE | VRE | VSE | VSE | VSE | VSE |
Year of collection | 2019 | 2019 | 2016 | 2015 | 2014 | 2017 | 2017 | 2014 | 2017 | 2015 | 2014 | 2016 |
Phage 38 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Phage 39 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Phage 40 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Phage 41 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Phage 42 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Phage 43 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Phage 44 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 |
Phage 45 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
Phage 40.1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Phage 42.1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Phage 44.1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |