Fig. 1
From: Transposable elements that have recently been mobile in the human genome
A-C UCSC Genome Browser screenshots of three polymorphic TE instances, hg19 assembly. INDEL track: genome-wide set of 111,509 polymorphic indels identified in 19 whole-genome sequencing datasets. Nonhuman primate sequence alignments are shown below the RepeatMasker track. D Location of repeat instances belonging to the recently mobile AluYa5 TE subfamily (horizontal lines) relative to the left edges of 600 randomly chosen indels of size ≥50 bp. Yellow: AluYa5 elements that match (≥90% mutual overlap) an indel; maroon: all other AluYa5 elements within 2 kb of the edge of the indel. Only indels with at least one flanking AluYa5 are included. E Same as D, for the older TE subfamily AluSx