Table 4 List of the top 10 significant enrichment pathways for DEGs
Pathway ID | ko | enrichment factor | q value | gene number |
|---|---|---|---|---|
A VS B | ||||
 Flavonoid biosynthesis | ko00941 | 9.49 | 7.55E-11 | 19 |
 Glycolysis / Gluconeogenesis | ko00010 | 4.25 | 6.93E-10 | 30 |
 Phenylpropanoid biosynthesis | ko00940 | 4.63 | 7.51E-09 | 24 |
 Tyrosine metabolism | ko00350 | 5.75 | 2.23E-06 | 14 |
 Phenylalanine metabolism | ko00360 | 4.85 | 2.60E-06 | 16 |
 Stilbenoid, diarylheptanoid and gingerol biosynthesis | ko00945 | 9.32 | 9.45E-05 | 7 |
 Flavone and flavonol biosynthesis | ko00944 | 6.28 | 0.0003917 | 8 |
 Circadian rhythm - plant | ko04712 | 4.95 | 0.0007079 | 9 |
 Carbon fixation in photosynthetic organisms | ko00710 | 2.78 | 0.0017219 | 16 |
 Nitrogen metabolism | ko00910 | 3.86 | 0.0079 | 8 |
B VS C | ||||
 Phenylalanine metabolism | ko00360 | 10.66 | 0.0002006 | 7 |
 Phenylpropanoid biosynthesis | ko00940 | 5.81 | 0.0151141 | 6 |
 Pentose and glucuronate interconversions | ko00040 | 8.49 | 0.0173551 | 4 |
 Isoquinoline alkaloid biosynthesis | ko00950 | 12.26 | 0.0209329 | 3 |
 Tropane, piperidine and pyridine alkaloid biosynthesis | ko00960 | 10.51 | 0.0271453 | 3 |
 Circadian rhythm - plant | ko04712 | 8.28 | 0.0456279 | 3 |
 Tyrosine metabolism | ko00350 | 6.19 | 0.0886087 | 3 |
 Arginine and proline metabolism | ko00330 | 4.13 | 0.0993424 | 4 |
 Glycerolipid metabolism | ko00561 | 4.94 | 1 | 3 |
 Flavone and flavonol biosynthesis | ko00944 | 7.88 | 1 | 2 |
C VS D | ||||
 Photosynthesis - antenna proteins | ko00196 | 12.03 | 1.14E-16 | 21 |
 Photosynthesis | ko00195 | 7.91 | 3.79E-11 | 39 |
 Carotenoid biosynthesis | ko00906 | 3.94 | 0.0032052 | 11 |
 Fatty acid elongation | ko00062 | 4.72 | 0.0150914 | 7 |
 Linoleic acid metabolism | ko00591 | 6.03 | 0.0235607 | 5 |
 Pentose and glucuronate interconversions | ko00040 | 2.64 | 0.0336898 | 12 |
 Glyoxylate and dicarboxylate metabolism | ko00630 | 2.08 | 0.0304964 | 19 |
 Cyanoamino acid metabolism | ko00460 | 2.57 | 0.0322172 | 12 |
 Cutin, suberine and wax biosynthesis | ko00073 | 6.11 | 0.0402492 | 4 |
 Alanine, aspartate and glutamate metabolism | ko00250 | 2.12 | 0.0397802 | 16 |