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Table 1 Genotype Distributions of both SVs in three Chinese goat breeds and Bezoars analyzed by WGS and their PCR validations

From: Genome-wide association study reveals 14 new SNPs and confirms two structural variants highly associated with the horned/polled phenotype in goats

Breed

Phenotype

Sample size

Genotype of the 10.1-kb deletion

Genotype of the 480-kb duplication

Two PCR productsa

Del/Del

Ref/Del

Ref/Ref

Dup/Dup

Ref/Dup

Ref/Ref

Deletion

Duplication

JT

polled

18

6

12

0

7

11

0

P (n = 18)

P (n = 18)

JT

PIS

4

4

0

0

4

0

0

P (n = 4)

P (n = 4)

JT

horned

23

0

0

23

0

0

23

A (n = 23)

A (n = 23)

CB

horned

15

0

0

15

0

0

15

A (n = 15)

A (n = 15)

TC

horned

14

0

0

14

0

0

14

A (n = 14)

A (n = 14)

Bezoars

unknown

21

0

0

21

0

0

21

  1. Note: a The two PCR products in the deletion and duplication regions were 369 bp and 1822 bp, respectively. The letter “P” means the presence of a PCR product, and the letter “A” means the absence. The WGS data from 21 Bezoars were downloaded from NCBI, and therefore their genomic DNA was unavailable