Table 1 The characteristics of identified SBP genes in sugarcane
Transcript ID | Name | Chr | Genome locations | ORF | Amino acids | MW (kDa) | pI | GRAVY | Group | Subcellular localization |
|---|---|---|---|---|---|---|---|---|---|---|
Sspon.001A0040480 | SsSBP1–1 | 1A | 108,429,474–108,435,971 | 2904 | 967 | 105.6349 | 5.45 | −0.303 | II | Nuclear |
Sspon.001D0044800 | SsSBP1–2 | 1D | 109,076,291–109,081,860 | 2697 | 898 | 98.0265 | 5.53 | − 0.313 | II | Nuclear |
Sspon.002A0013930 | SsSBP2–1 | 2A | 29,209,489–29,217,185 | 1644 | 547 | 57.0766 | 9.25 | −0.244 | VII | Nuclear |
Sspon.002B0011930 | SsSBP2–2 | 2B | 28,141,105–28,145,280 | 1329 | 442 | 45.9953 | 6.53 | −0.343 | VII | Nuclear |
Sspon.002D0010972 | SsSBP2–3 | 2D | 23,780,730–23,784,862 | 1227 | 408 | 42.4603 | 6.53 | −0.354 | VII | Nuclear |
Sspon.002A0015030 | SsSBP3–1 | 2A | 31,009,987–31,013,034 | 1179 | 392 | 40.9194 | 9.14 | −0.477 | VII | Nuclear |
Sspon.002B0012730 | SsSBP3–2 | 2B | 29,525,208–29,528,451 | 1191 | 396 | 41.2847 | 8.98 | −0.462 | VII | Nuclear |
Sspon.002C0016120 | SsSBP3–3 | 2C | 35,044,657–35,076,244 | 3195 | 1064 | 116.0996 | 7.94 | −0.351 | VII | Nuclear |
Sspon.002D0011720 | SsSBP3–4 | 2D | 25,045,205–25,048,503 | 1173 | 390 | 40.7902 | 9.04 | −0.491 | VII | Nuclear |
Sspon.002B0008220 | SsSBP4–1 | 2B | 20,690,286–20,695,232 | 1269 | 422 | 42.7577 | 9.68 | −0.315 | VI | membrane |
Sspon.002C0010600 | SsSBP4–2 | 2C | 22,401,265–22,403,347 | 576 | 191 | 19.3214 | 9.87 | −0.399 | VI | Nuclear |
Sspon.002D0015440 | SsSBP4–3 | 2D | 33,849,661–33,853,542 | 723 | 240 | 24.4241 | 10.32 | −0.533 | VI | Nuclear |
Sspon.002C0010571 | SsSBP5 | 2C | 22,345,677–22,347,101 | 570 | 189 | 19.3353 | 9.96 | −0.564 | VI | Nuclear |
Sspon.002D0015430 | SsSBP6 | 2D | 33,845,362–33,846,340 | 600 | 199 | 20.1822 | 9.96 | −0.512 | VI | Nuclear |
Sspon.003A0000410 | SsSBP7–1 | 3A | 1,071,412–1,075,547 | 1185 | 394 | 41.3121 | 9.15 | −0.496 | VII | Nuclear |
Sspon.003B0003860 | SsSBP7–2 | 3B | 7,790,347–7,793,952 | 1494 | 497 | 52.3230 | 8.94 | −0.291 | VII | Nuclear |
Sspon.003C0005960 | SsSBP7–3 | 3C | 11,433,782–11,437,627 | 1446 | 481 | 51.5591 | 9.57 | −0.44 | VII | Nuclear |
Sspon.003A0019770 | SsSBP8 | 3A | 50,439,706–50,445,244 | 2550 | 849 | 94.3843 | 6.22 | −0.423 | IV | Nuclear |
Sspon.003C0027810 | SsSBP9 | 3C | 70,928,512–70,931,044 | 2604 | 867 | 96.6721 | 7.81 | −0.473 | IV | Nuclear |
Sspon.004A0021810 | SsSBP10–1 | 4A | 62,618,391–62,622,079 | 768 | 255 | 27.6747 | 8.78 | −0.693 | V | Nuclear |
Sspon.004B0022500 | SsSBP10–2 | 4B | 66,878,517–66,882,065 | 1152 | 383 | 41.8795 | 8.67 | −0.709 | V | Nuclear |
Sspon.004A0023470 | SsSBP11–1 | 4A | 66,657,938–66,661,498 | 1458 | 485 | 51.7285 | 9.09 | −0.557 | V | Nuclear |
Sspon.004D0025580 | SsSBP11–2 | 4D | 76,179,579–76,181,404 | 1077 | 358 | 38.8064 | 9.36 | −0.673 | V | Nuclear |
Sspon.004A0023540 | SsSBP12 | 4A | 66,840,410–66,841,321 | 1422 | 473 | 50.3841 | 9.01 | −0.551 | V | membrane |
Sspon.004B0022100 | SsSBP13 | 4B | 66,160,113–66,162,260 | 894 | 297 | 31.0155 | 9.24 | −0.16 | III | Nuclear |
Sspon.004C0023650 | SsSBP14 | 4C | 72,419,102–72,423,304 | 1314 | 437 | 45.6945 | 7.63 | −0.296 | III | Nuclear |
Sspon.004D0023290 | SsSBP15–1 | 4D | 70,928,686–70,930,879 | 936 | 311 | 32.8608 | 9.53 | −0.295 | III | Nuclear |
Sspon.008B0005752 | SsSBP15–2 | 8B | 10,803,440–10,806,188 | 1263 | 420 | 44.4747 | 9.22 | −0.588 | III | Nuclear |
Sspon.008C0006030 | SsSBP15–3 | 8C | 13,386,438–13,389,568 | 1284 | 427 | 45.1796 | 9.23 | −0.583 | III | Nuclear |
Sspon.004D0028460 | SsSBP16 | 4D | 82,589,080–82,591,351 | 1260 | 419 | 45.7805 | 9.52 | −0.608 | V | Nuclear |
Sspon.005A0006871 | SsSBP17–1 | 5A | 17,014,877–17,018,085 | 1185 | 394 | 42.8134 | 7.47 | −0.643 | III | Nuclear |
Sspon.005D0002360 | SsSBP17–2 | 5D | 5,016,047–5,019,246 | 1191 | 396 | 42.8995 | 7.47 | −0.641 | III | Nuclear |
Sspon.005A0007540 | SsSBP18–1 | 5A | 18,447,549–18,450,470 | 1203 | 400 | 40.9130 | 9.50 | −0.373 | VII | Nuclear |
Sspon.005C0003700 | SsSBP18–2 | 5C | 9,553,547–9,557,033 | 1104 | 367 | 37.6902 | 9.48 | −0.429 | VII | Nuclear |
Sspon.005D0002370 | SsSBP19 | 5D | 5,036,183–5,040,905 | 1191 | 396 | 43.2850 | 7.42 | −0.716 | III | Nuclear |
Sspon.006A0002670 | SsSBP20–1 | 6A | 6,325,351–6,330,604 | 2856 | 951 | 104.3392 | 7.10 | −0.354 | II | Nuclear |
Sspon.006D0001140 | SsSBP20–2 | 6D | 3,638,437–3,642,110 | 2298 | 765 | 84.0087 | 8.79 | −0.459 | II | Nuclear |
Sspon.006A0003761 | SsSBP21–1 | 6A | 8,766,368–8,771,945 | 1410 | 469 | 48.7223 | 8.15 | −0.456 | VII | Nuclear |
Sspon.006D0002450 | SsSBP21–2 | 6D | 6,732,739–6,738,087 | 1419 | 472 | 49.8476 | 8.62 | −0.479 | VII | Nuclear |
Sspon.006A0018544 | SsSBP22 | 6A | 71,945,300–71,953,194 | 1065 | 354 | 37.6695 | 9.26 | −0.173 | VII | Nuclear |
Sspon.006A0019261 | SsSBP23 | 6A | 75,415,532–75,423,459 | 1005 | 334 | 35.1004 | 9.93 | −0.328 | VII | Nuclear |
Sspon.006B0001500 | SsSBP24–1 | 6B | 3,848,048–3,852,283 | 1248 | 415 | 43.1377 | 8.93 | −0.627 | VII | Nuclear |
Sspon.006C0001780 | SsSBP24–2 | 6C | 4,165,730–4,169,347 | 1251 | 416 | 42.8242 | 8.87 | −0.621 | VII | Nuclear |
Sspon.006D0000820 | SsSBP24–3 | 6D | 2,918,125–2,922,066 | 1236 | 411 | 42.5089 | 8.87 | −0.627 | VII | Nuclear |
Sspon.006C0002070 | SsSBP25 | 6C | 4,855,835–4,856,954 | 897 | 298 | 30.4877 | 9.80 | −0.63 | II | Nuclear |
Sspon.006D0002410 | SsSBP26 | 6D | 6,577,854–6,582,459 | 726 | 241 | 26.0042 | 8.71 | −0.741 | VII | Nuclear |
Sspon.007A0010700 | SsSBP27 | 7A | 22,289,512–22,304,260 | 1998 | 665 | 72.2692 | 5.37 | −0.438 | I | Nuclear |
Sspon.007A0010740 | SsSBP28 | 7A | 22,398,323–22,403,566 | 1311 | 436 | 47.2836 | 5.56 | −0.463 | I | Nuclear |
Sspon.008B0001960 | SsSBP29 | 8B | 2,868,989–2,873,212 | 1272 | 423 | 45.4750 | 9.32 | −0.382 | V | Nuclear |
Sspon.ctg0104090 | SsSBP30 | tig00011976 | 14–4187 | 1065 | 354 | 38.0538 | 9.30 | −0.512 | VII | Nuclear |