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Table 1 Top tena most differentially-responsive gut transcripts of tomato spotted wilt virus-infected Frankliniella occidentalis larvae

From: Integration of transcriptomics and network analysis reveals co-expressed genes in Frankliniella occidentalis larval guts that respond to tomato spotted wilt virus infection

bTime-larval stage

Transcript ID

cLog2 fold change

dAdj.

p-value

eGene description

3-L1

FOCC009344

7.36

5E-05

cuticle protein CP14.6

FOCC001013

7.29

2E-03

zinc finger protein 512B-like

FOCC001012

6.56

1E-02

hypothetical protein FOCC_FOCC001012

FOCC013209

6.54

7E-04

low-density lipoprotein receptor-related protein 12

FOCC006427

6.11

1E-05

golgin subfamily A member 6-like protein 22

FOCC001001

5.29

9E-04

hypothetical protein FOCC_FOCC001001, partial

FOCC017932

5.17

6E-04

hypothetical protein FOCC_FOCC017932, partial

FOCC005944

4.78

4E-03

proline-rich extensin-like protein EPR1

FOCC001010

4.73

1E-02

hypothetical protein FOCC_FOCC001010

FOCC002062

−5.02

0E+ 00

venom carboxylesterase-6-like

24-L2

FOCC012858

−1.39

2E-05

myrosinase 1-like

FOCC015174

−1.96

1E-02

transcriptional regulator ATRX-like isoform X1

FOCC015182

−2.13

3E-03

hypothetical protein FOCC_FOCC015182

FOCC015649

−2.51

3E-02

hypothetical protein FOCC_FOCC015649

FOCC015178

−2.75

4E-03

death-associated inhibitor of apoptosis 1-like isoform X2

FOCC012492

−4.43

5E-02

hypothetical protein FOCC_FOCC013062

FOCC004067

−7.40

2E-02

foot protein 1 variant 2

48-L2

FOCC001020

−4.72

3E-06

skin secretory protein xP2-like

FOCC014805

−4.98

5E-06

endocuticle structural glycoprotein SgAbd-8-like

FOCC007139

−5.06

3E-03

glycine-rich cell wall structural protein-like

FOCC017317

− 5.16

5E-06

endocuticle structural glycoprotein SgAbd-8-like

FOCC016782

−5.23

3E-02

farnesyl pyrophosphate synthase

FOCC001002

−5.38

7E-07

hypothetical protein FOCC_FOCC001002

FOCC014804

−5.59

5E-09

paternally-expressed gene 3 protein-like

FOCC016120

−5.71

2E-04

cuticle protein 7

FOCC017781

−6.80

3E-04

terminal uridylyltransferase 4-like

FOCC017730

−9.20

3E-02

hypothetical protein FOCC_FOCC017730, partial

  1. aexception, only seven transcripts in total differentially expressed in 24-L2; b Time-larval stage = cohorts of first instars (L1) given a 24-h acquisition access period on virus-infected plant tissue (or healthy tissue for control group), then moved to green bean pods as food source, followed by sampling of larval groups at 3 h (3-L1), 24 h (24-L2, early second instar), and 48 h (48-L2, late second instars) after removal of virus inoculum. c RNA-Seq, differential expression analysis of normalized read counts of tomato spotted wilt virus-infected thrips relative to non-infected thrips (sign/no sign indicates direction of change); d False discovery rate (FDR) corrected p-values with the Benjamini and Hochberg method [34]; e Blastx query of FOCC transcript against NCBI non-redundant protein database using Blast2GO. Refer to Table S2 for a list of all significant (Padj < 0.05) differentially-expressed transcripts and annotations